1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272
|
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
#' @importFrom stats quantile median na.omit na.exclude na.pass na.fail
#' @importFrom R6 R6Class
#' @importFrom purrr as_mapper map map2 map_chr map2_chr map_dbl map_dfr map_int map_lgl keep imap imap_chr
#' @importFrom purrr flatten reduce walk
#' @importFrom assertthat assert_that is.string
#' @importFrom rlang list2 %||% is_false abort dots_n warn enquo quo_is_null enquos is_integerish quos quo
#' @importFrom rlang eval_tidy new_data_mask syms env new_environment env_bind set_names exec
#' @importFrom rlang is_bare_character quo_get_expr quo_get_env quo_set_expr .data seq2 is_interactive
#' @importFrom rlang expr caller_env is_character quo_name is_quosure enexpr enexprs as_quosure
#' @importFrom rlang is_list call2 is_empty as_function as_label arg_match is_symbol is_call call_args
#' @importFrom rlang quo_set_env quo_get_env is_formula quo_is_call f_rhs parse_expr f_env new_quosure
#' @importFrom rlang new_quosures expr_text caller_env check_dots_empty check_dots_empty0 dots_list is_string inform
#' @importFrom rlang is_bare_list call_name
#' @importFrom tidyselect vars_pull eval_select eval_rename
#' @importFrom glue glue
#' @useDynLib arrow, .registration = TRUE
#' @keywords internal
"_PACKAGE"
# TODO(ARROW-17666): Include notes about features not supported here.
supported_dplyr_methods <- list(
select = NULL,
filter = NULL,
collect = NULL,
summarise = c(
"window functions not currently supported;",
'arguments `.drop = FALSE` and `.groups = "rowwise"` not supported'
),
group_by = NULL,
groups = NULL,
group_vars = NULL,
group_by_drop_default = NULL,
ungroup = NULL,
mutate = NULL,
transmute = NULL,
arrange = NULL,
rename = NULL,
pull = c(
"the `name` argument is not supported;",
"returns an R vector by default but this behavior is deprecated and will",
"return an Arrow [ChunkedArray] in a future release. Provide",
"`as_vector = TRUE/FALSE` to control this behavior, or set",
"`options(arrow.pull_as_vector)` globally."
),
relocate = NULL,
compute = NULL,
collapse = NULL,
distinct = c(
"`.keep_all = TRUE` returns a non-missing value if present,",
"only returning missing values if all are missing."
),
left_join = "the `copy` argument is ignored",
right_join = "the `copy` argument is ignored",
inner_join = "the `copy` argument is ignored",
full_join = "the `copy` argument is ignored",
semi_join = "the `copy` argument is ignored",
anti_join = "the `copy` argument is ignored",
count = NULL,
tally = NULL,
rename_with = NULL,
union = NULL,
union_all = NULL,
slice_head = c(
"slicing within groups not supported;",
"Arrow datasets do not have row order, so head is non-deterministic;",
"`prop` only supported on queries where `nrow()` is knowable without evaluating"
),
slice_tail = c(
"slicing within groups not supported;",
"Arrow datasets do not have row order, so tail is non-deterministic;",
"`prop` only supported on queries where `nrow()` is knowable without evaluating"
),
slice_min = c(
"slicing within groups not supported;",
"`with_ties = TRUE` (dplyr default) is not supported;",
"`prop` only supported on queries where `nrow()` is knowable without evaluating"
),
slice_max = c(
"slicing within groups not supported;",
"`with_ties = TRUE` (dplyr default) is not supported;",
"`prop` only supported on queries where `nrow()` is knowable without evaluating"
),
slice_sample = c(
"slicing within groups not supported;",
"`replace = TRUE` and the `weight_by` argument not supported;",
"`n` only supported on queries where `nrow()` is knowable without evaluating"
),
glimpse = NULL,
show_query = NULL,
explain = NULL
)
# This should be run at session exit and must be called
# to avoid a segmentation fault at shutdown
finalize_s3 <- function(env) {
FinalizeS3()
}
# Helper environment to register the exit hook
s3_finalizer <- new.env(parent = emptyenv())
#' @importFrom vctrs s3_register vec_size vec_cast vec_unique
.onLoad <- function(...) {
# Make sure C++ knows on which thread it is safe to call the R API
InitializeMainRThread()
for (cl in c("Dataset", "ArrowTabular", "RecordBatchReader", "arrow_dplyr_query")) {
for (m in names(supported_dplyr_methods)) {
s3_register(paste0("dplyr::", m), cl)
}
}
s3_register("dplyr::tbl_vars", "arrow_dplyr_query")
s3_register("pillar::type_sum", "DataType")
for (cl in c(
"Array",
"RecordBatch",
"ChunkedArray",
"Table",
"Schema",
"Field",
"DataType",
"RecordBatchReader"
)) {
s3_register("reticulate::py_to_r", paste0("pyarrow.lib.", cl))
s3_register("reticulate::r_to_py", cl)
}
# Create the .cache$functions list at package load time.
# We can't do this at package build time because list_compute_functions()
# needs the C++ library loaded
create_binding_cache()
if (tolower(Sys.info()[["sysname"]]) == "windows") {
# Disable multithreading on Windows
# See https://issues.apache.org/jira/browse/ARROW-8379
options(arrow.use_threads = FALSE)
# Try to set timezone database
configure_tzdb()
}
# Set interrupt handlers
SetEnableSignalStopSource(TRUE)
# Register extension types that we use internally
reregister_extension_type(vctrs_extension_type(vctrs::unspecified()))
# Registers a callback to run at session exit
# This can't be done in .onUnload or .onDetach because those hooks are
# not guaranteed to run (e.g. they only run if the user unloads arrow)
reg.finalizer(s3_finalizer, finalize_s3, onexit = TRUE)
invisible()
}
configure_tzdb <- function() {
# This is needed on Windows to support timezone-aware calculations
if (requireNamespace("tzdb", quietly = TRUE)) {
tzdb::tzdb_initialize()
set_timezone_database(tzdb::tzdb_path("text"))
} else {
msg <- paste(
"The tzdb package is not installed.",
"Timezones will not be available to Arrow compute functions."
)
packageStartupMessage(msg)
}
}
.onAttach <- function(libname, pkgname) {
# Just to be extra safe, let's wrap this in a try();
# we don't want a failed startup message to prevent the package from loading
try(
{
# On macOS only, Check if we are running in under emulation, and warn this will not work
if (on_rosetta()) {
packageStartupMessage(
paste(
"Warning:",
" It appears that you are running R and Arrow in emulation (i.e. you're",
" running an Intel version of R on a non-Intel mac). This configuration is",
" not supported by arrow, you should install a native (arm64) build of R",
" and use arrow with that. See https://cran.r-project.org/bin/macosx/",
"",
sep = "\n"
)
)
}
features <- arrow_info()$capabilities
# That has all of the #ifdef features, plus the compression libs and the
# string libraries (but not the memory allocators, they're added elsewhere)
#
# Let's print a message if some are off
if (some_features_are_off(features)) {
packageStartupMessage(
paste(
"Some features are not enabled in this build of Arrow.",
"Run `arrow_info()` for more information."
)
)
# On macOS binaries from CRAN can be hobbled. They sometimes restrict access to our
# dependency source downloading even though we can build from source on their machines.
# They also refuse to allow libarrow binaries to be downloaded, so instead distribute
# hobbled arrow binaries
# If on macOS, and features are disabled, advise that reinstalling might help
if (identical(tolower(Sys.info()[["sysname"]]), "darwin")) {
packageStartupMessage(
paste0(
"The repository you retrieved Arrow from did not include all of Arrow's features.\n",
"You can install a fully-featured version by running:\n",
"`install.packages('arrow', repos = 'https://apache.r-universe.dev')`."
)
)
}
}
},
silent = TRUE
)
}
# Clean up the StopSource that was registered in .onLoad() so that if the
# package is reloaded we don't get an error from C++ informing us that
# a StopSource has already been set up.
.onUnload <- function(...) {
DeinitializeMainRThread()
}
# While .onUnload should be sufficient, devtools::load_all() does not call it
# (but it does call .onDetach()). It is safe to call DeinitializeMainRThread()
# more than once.
.onDetach <- function(...) {
DeinitializeMainRThread()
}
# True when the OS is linux + and the R version is development
# helpful for skipping on Valgrind, and the sanitizer checks (clang + gcc) on cran
on_linux_dev <- function() {
identical(tolower(Sys.info()[["sysname"]]), "linux") &&
grepl("devel", R.version.string)
}
on_macos_10_13_or_lower <- function() {
identical(unname(Sys.info()["sysname"]), "Darwin") &&
package_version(unname(Sys.info()["release"])) < "18.0.0"
}
option_use_threads <- function() {
!is_false(getOption("arrow.use_threads"))
}
option_compress_metadata <- function() {
!is_false(getOption("arrow.compress_metadata"))
}
|