File: record-batch-reader.R

package info (click to toggle)
apache-arrow 23.0.1-1
  • links: PTS
  • area: main
  • in suites: sid
  • size: 76,220 kB
  • sloc: cpp: 654,608; python: 70,522; ruby: 45,964; ansic: 18,742; sh: 7,365; makefile: 669; javascript: 125; xml: 41
file content (273 lines) | stat: -rw-r--r-- 9,360 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements.  See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership.  The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License.  You may obtain a copy of the License at
#
#   http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied.  See the License for the
# specific language governing permissions and limitations
# under the License.

#' @title RecordBatchReader classes
#' @description Apache Arrow defines two formats for [serializing data for interprocess
#' communication
#' (IPC)](https://arrow.apache.org/docs/format/Columnar.html#serialization-and-interprocess-communication-ipc):
#' a "stream" format and a "file" format, known as Feather.
#' `RecordBatchStreamReader` and `RecordBatchFileReader` are
#' interfaces for accessing record batches from input sources in those formats,
#' respectively.
#'
#' For guidance on how to use these classes, see the examples section.
#'
#' @seealso [read_ipc_stream()] and [read_feather()] provide a much simpler interface
#' for reading data from these formats and are sufficient for many use cases.
#' @usage NULL
#' @format NULL
#' @docType class
#' @section Factory:
#'
#' The `RecordBatchFileReader$create()` and `RecordBatchStreamReader$create()`
#' factory methods instantiate the object and
#' take a single argument, named according to the class:
#'
#' - `file` A character file name, raw vector, or Arrow file connection object
#'    (e.g. [RandomAccessFile]).
#' - `stream` A raw vector, [Buffer], or [InputStream].
#'
#' @section Methods:
#'
#' - `$read_next_batch()`: Returns a `RecordBatch`, iterating through the
#'   Reader. If there are no further batches in the Reader, it returns `NULL`.
#' - `$schema`: Returns a [Schema] (active binding)
#' - `$batches()`: Returns a list of `RecordBatch`es
#' - `$read_table()`: Collects the reader's `RecordBatch`es into a [Table]
#' - `$get_batch(i)`: For `RecordBatchFileReader`, return a particular batch
#'    by an integer index.
#' - `$num_record_batches()`: For `RecordBatchFileReader`, see how many batches
#'    are in the file.
#'
#' @rdname RecordBatchReader
#' @name RecordBatchReader
#' @export
#' @include arrow-object.R
#' @examples
#' tf <- tempfile()
#' on.exit(unlink(tf))
#'
#' batch <- record_batch(chickwts)
#'
#' # This opens a connection to the file in Arrow
#' file_obj <- FileOutputStream$create(tf)
#' # Pass that to a RecordBatchWriter to write data conforming to a schema
#' writer <- RecordBatchFileWriter$create(file_obj, batch$schema)
#' writer$write(batch)
#' # You may write additional batches to the stream, provided that they have
#' # the same schema.
#' # Call "close" on the writer to indicate end-of-file/stream
#' writer$close()
#' # Then, close the connection--closing the IPC message does not close the file
#' file_obj$close()
#'
#' # Now, we have a file we can read from. Same pattern: open file connection,
#' # then pass it to a RecordBatchReader
#' read_file_obj <- ReadableFile$create(tf)
#' reader <- RecordBatchFileReader$create(read_file_obj)
#' # RecordBatchFileReader knows how many batches it has (StreamReader does not)
#' reader$num_record_batches
#' # We could consume the Reader by calling $read_next_batch() until all are,
#' # consumed, or we can call $read_table() to pull them all into a Table
#' tab <- reader$read_table()
#' # Call as.data.frame to turn that Table into an R data.frame
#' df <- as.data.frame(tab)
#' # This should be the same data we sent
#' all.equal(df, chickwts, check.attributes = FALSE)
#' # Unlike the Writers, we don't have to close RecordBatchReaders,
#' # but we do still need to close the file connection
#' read_file_obj$close()
RecordBatchReader <- R6Class(
  "RecordBatchReader",
  inherit = ArrowObject,
  public = list(
    read_next_batch = function() RecordBatchReader__ReadNext(self),
    batches = function() RecordBatchReader__batches(self),
    read_table = function() Table__from_RecordBatchReader(self),
    Close = function() RecordBatchReader__Close(self),
    export_to_c = function(stream_ptr) ExportRecordBatchReader(self, stream_ptr),
    ToString = function() format_schema(self),
    .unsafe_delete = function() {
      RecordBatchReader__UnsafeDelete(self)
      super$.unsafe_delete()
    }
  ),
  active = list(
    schema = function() RecordBatchReader__schema(self)
  )
)
RecordBatchReader$create <- function(..., batches = list(...), schema = NULL) {
  are_batches <- map_lgl(batches, ~ inherits(., "RecordBatch"))
  if (!all(are_batches)) {
    stop(
      "All inputs to RecordBatchReader$create must be RecordBatches",
      call. = FALSE
    )
  }
  RecordBatchReader__from_batches(batches, schema)
}

#' @export
names.RecordBatchReader <- function(x) names(x$schema)

#' @export
dim.RecordBatchReader <- function(x) c(NA_integer_, length(x$schema))

#' @export
as.data.frame.RecordBatchReader <- function(x, row.names = NULL, optional = FALSE, ...) {
  as.data.frame(x$read_table(), row.names = row.names, optional = optional, ...)
}

#' @export
head.RecordBatchReader <- function(x, n = 6L, ...) {
  assert_is(n, c("numeric", "integer"))
  assert_that(length(n) == 1)
  # Negative n requires knowing nrow(x), which requires consuming the whole RBR
  assert_that(n >= 0)
  if (!is.integer(n)) {
    n <- floor(n)
  }
  RecordBatchReader__Head(x, n)
}

#' @export
tail.RecordBatchReader <- function(x, n = 6L, ...) {
  tail_from_batches(x$batches(), n)
}

#' @rdname RecordBatchReader
#' @usage NULL
#' @format NULL
#' @export
RecordBatchStreamReader <- R6Class("RecordBatchStreamReader", inherit = RecordBatchReader)
RecordBatchStreamReader$create <- function(stream) {
  if (inherits(stream, c("raw", "Buffer"))) {
    # TODO: deprecate this because it doesn't close the connection to the Buffer
    # (that's a problem, right?)
    stream <- BufferReader$create(stream)
  }
  assert_is(stream, "InputStream")
  ipc___RecordBatchStreamReader__Open(stream)
}
#' @include arrowExports.R
RecordBatchReader$import_from_c <- RecordBatchStreamReader$import_from_c <- ImportRecordBatchReader

#' @rdname RecordBatchReader
#' @usage NULL
#' @format NULL
#' @export
RecordBatchFileReader <- R6Class(
  "RecordBatchFileReader",
  inherit = ArrowObject,
  # Why doesn't this inherit from RecordBatchReader in C++?
  # Origin: https://github.com/apache/arrow/pull/679
  public = list(
    get_batch = function(i) {
      ipc___RecordBatchFileReader__ReadRecordBatch(self, i)
    },
    batches = function() {
      ipc___RecordBatchFileReader__batches(self)
    },
    read_table = function() Table__from_RecordBatchFileReader(self)
  ),
  active = list(
    num_record_batches = function() ipc___RecordBatchFileReader__num_record_batches(self),
    schema = function() ipc___RecordBatchFileReader__schema(self)
  )
)
RecordBatchFileReader$create <- function(file) {
  if (inherits(file, c("raw", "Buffer"))) {
    # TODO: deprecate this because it doesn't close the connection to the Buffer
    # (that's a problem, right?)
    file <- BufferReader$create(file)
  }
  assert_is(file, "InputStream")
  ipc___RecordBatchFileReader__Open(file)
}

#' Convert an object to an Arrow RecordBatchReader
#'
#' @param x An object to convert to a [RecordBatchReader]
#' @param schema The [schema()] that must match the schema returned by each
#'   call to `x` when `x` is a function.
#' @param ... Passed to S3 methods
#'
#' @return A [RecordBatchReader]
#' @export
#'
#' @examplesIf arrow_with_dataset()
#' reader <- as_record_batch_reader(data.frame(col1 = 1, col2 = "two"))
#' reader$read_next_batch()
#'
as_record_batch_reader <- function(x, ...) {
  UseMethod("as_record_batch_reader")
}

#' @rdname as_record_batch_reader
#' @export
as_record_batch_reader.RecordBatchReader <- function(x, ...) {
  x
}

#' @rdname as_record_batch_reader
#' @export
as_record_batch_reader.Table <- function(x, ...) {
  RecordBatchReader__from_Table(x)
}

#' @rdname as_record_batch_reader
#' @export
as_record_batch_reader.RecordBatch <- function(x, ...) {
  RecordBatchReader$create(x, schema = x$schema)
}

#' @rdname as_record_batch_reader
#' @export
as_record_batch_reader.data.frame <- function(x, ...) {
  check_named_cols(x)
  RecordBatchReader$create(as_record_batch(x))
}

#' @rdname as_record_batch_reader
#' @export
as_record_batch_reader.Dataset <- function(x, ...) {
  Scanner$create(x)$ToRecordBatchReader()
}

#' @rdname as_record_batch_reader
#' @export
as_record_batch_reader.function <- function(x, ..., schema) {
  assert_that(inherits(schema, "Schema"))
  RecordBatchReader__from_function(x, schema)
}

#' @rdname as_record_batch_reader
#' @export
as_record_batch_reader.arrow_dplyr_query <- function(x, ...) {
  # See query-engine.R for ExecPlan/Nodes
  plan <- ExecPlan$create()
  final_node <- plan$Build(x)
  on.exit(plan$.unsafe_delete())

  plan$Run(final_node)
}

#' @rdname as_record_batch_reader
#' @export
as_record_batch_reader.Scanner <- function(x, ...) {
  x$ToRecordBatchReader()
}