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#!/bin/bash
APBS_EXE="apbs"
BASE_PATH="$( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )"
export PATH="$BASE_PATH/../../../bin:$PATH"
cd $BASE_PATH
EXCLUDE="pygbe"
DIRS=`find . -maxdepth 1 -type d -name "[a-zA-Z]*" | awk -F'/' '{print $NF}' | grep -v $EXCLUDE`
for dir in $DIRS
do
cd $BASE_PATH
cd $dir
for infile in `ls -1 *.in`
do
echo -n "$APBS_EXE $dir/$infile "
SECONDS=0
#/dev/null 2>&1
$APBS_EXE $infile > OUTPUT.txt 2>&1
status=$?
duration=$SECONDS
echo "$(($duration / 60)) minutes and $(($duration % 60)) seconds elapsed."
if [[ "$status" -ne "0" ]]; then
echo "***** $infile, $status: failed"
fi
done
done
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