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/** \file apop_db_mysql.c
This file is included directly into \ref apop_db.c. It is read only if APOP_USE_MYSQL is defined.*/
/* Copyright (c) 2006--2007 by Ben Klemens. Licensed under the GPLv2; see COPYING. */
#include <my_global.h>
#include <my_sys.h>
#include <mysql.h>
#include <math.h>
static MYSQL *mysql_db;
#define Areweconected(retval) Apop_stopif(!mysql_db, return retval, 0, \
"No connection to a mySQL/mariadb database. apop_db_open() failure?");
static char *opt_host_name = NULL; /* server host (default=localhost) */
static unsigned int opt_port_num = 0; /* port number (use built-in value) */
static char *opt_socket_name = NULL; /* socket name (use built-in value) */
static unsigned int opt_flags = 0; /* connection flags (none) */
#define Apop_mstopif(cond, returnop, str) \
Apop_stopif(cond, returnop, 0, \
str "\n mySQL/mariadb error %u: %s\n", mysql_errno (mysql_db), mysql_error (mysql_db));
static int apop_mysql_db_open(char const *in){
Apop_stopif(!in, return 2, 0, "MySQL needs a non-NULL db name.");
mysql_db = mysql_init (NULL);
Apop_stopif(!mysql_db, return 1, 0, "mysql_init() failed (probably out of memory)");
Apop_mstopif (!mysql_real_connect (mysql_db, opt_host_name, apop_opts.db_user, apop_opts.db_pass,
in, opt_port_num, opt_socket_name, CLIENT_MULTI_STATEMENTS+opt_flags),
mysql_close (mysql_db); return 1,
"mysql_real_connect() failed");
return 0;
}
static void apop_mysql_db_close(int ignoreme){
if (mysql_db) mysql_close (mysql_db);
}
/*
//Cut & pasted & cleaned from the mysql manual.
static void process_results(void){
else // mysql_store_result() returned nothing; should it have?
Apop_stopif(mysql_field_count(mysql_db) == 0, , 0, "apop_query error");
//else query wasn't a select & just didn't return data.
}
*/
static double apop_mysql_query(char *query){
Apop_mstopif(mysql_query(mysql_db, query), return 1, "apop_mysql_query failed");
MYSQL_RES *result = mysql_store_result(mysql_db);
if (result) mysql_free_result(result);
return 0;
}
static double apop_mysql_table_exists(char const *table, int delme){
Areweconected(GSL_NAN);
MYSQL_RES *res_set = mysql_list_tables(mysql_db, table);
Apop_mstopif(!mysql_list_tables(mysql_db, table), return GSL_NAN,
"show tables query failed.");
int is_found = mysql_num_rows(res_set);
mysql_free_result(res_set);
if (!is_found) return 0;
if (delme =='d' || delme=='D'){
char *a_query;
Asprintf(&a_query, "drop table %s", table);
Apop_mstopif(mysql_query (mysql_db, a_query), GSL_NAN,
"table exists, but table dropping failed");
}
return 1;
}
#define check_and_clean(do_if_failure) \
Apop_mstopif( mysql_errno (conn), \
if (out) do_if_failure; return NULL, \
"mysql_fetch_row() failed"); \
return out; \
static int get_name_row(unsigned int *num_fields, MYSQL_FIELD *fields){
for(size_t i = 0; i < *num_fields; i++)
if (apop_opts.db_name_column && !strcasecmp(fields[i].name, apop_opts.db_name_column)){
(*num_fields)--;
return i;
}
return -1;
}
static void * process_result_set_data (MYSQL *conn, MYSQL_RES *res_set) {
MYSQL_ROW row;
unsigned int num_fields = mysql_num_fields(res_set);
unsigned int num_rows = mysql_num_rows (res_set);
if (!num_fields || !num_rows) return NULL;
MYSQL_FIELD *fields = mysql_fetch_fields(res_set);
int name_row = get_name_row(&num_fields, fields);
apop_data *out = apop_data_alloc(0, num_rows, num_fields);
for(size_t i = 0; i < num_fields+ (name_row>=0); i++)
if (i!=name_row) apop_name_add(out->names, fields[i].name, 'c');
for (int i=0; (row = mysql_fetch_row (res_set)); i++) {
int passed_name = 0;
for (size_t j = 0; j < mysql_num_fields (res_set); j++){
if (j==name_row){
apop_name_add(out->names, row[j], 'r');
passed_name = 1;
continue;
}
if (!row[j]) apop_data_set(out, i , j-passed_name, NAN);
else {
char *end = NULL;
double num = strtod(row[j], &end);
apop_data_set(out, i , j-passed_name, *end ? NAN : num);
}
}
}
check_and_clean(apop_data_free(out))
}
static void * process_result_set_vector (MYSQL *conn, MYSQL_RES *res_set) {
MYSQL_ROW row;
unsigned int num_fields = mysql_num_fields(res_set);
unsigned int num_rows = mysql_num_rows (res_set);
if (num_fields == 0 || num_rows == 0) return NULL;
gsl_vector *out = gsl_vector_alloc(num_rows);
for (int j=0; (row = mysql_fetch_row (res_set)); j++){
double valor = (!row[0] || !strcmp(row[0], "NULL"))
? GSL_NAN : atof(row[0]);
gsl_vector_set(out, j, valor);
}
check_and_clean(gsl_vector_free(out))
}
static void * process_result_set_chars (MYSQL *conn, MYSQL_RES *res_set) {
MYSQL_ROW row;
unsigned int total_cols = mysql_num_fields(res_set);
unsigned int total_rows = mysql_num_rows(res_set);
MYSQL_FIELD *fields = mysql_fetch_fields(res_set);
int name_row = get_name_row(&total_cols, fields);
apop_data *out = apop_text_alloc(NULL, total_rows, total_cols);
for (size_t i = 0; i < total_cols + (name_row>=0); i++)
if (i!=name_row) apop_name_add(out->names, fields[i].name, 't');
for (int i=0; (row = mysql_fetch_row (res_set)); i++){
int passed_name = 0;
for (size_t jj=0; jj<total_cols; jj++){
if (jj==name_row){
apop_name_add(out->names, row[jj], 'r');
passed_name = 1;
continue;
}
apop_text_set(out, i, jj-passed_name, "%s", (row[jj]==NULL)? apop_opts.nan_string : row[jj]);
}
}
check_and_clean(;)
}
static void * apop_mysql_query_core(char *query, void *(*callback)(MYSQL*, MYSQL_RES*)){
Areweconected(NULL);
apop_data *output = NULL;
Apop_mstopif(mysql_query (mysql_db, query), return NULL, "mysql_query() failed");
MYSQL_RES *res_set = mysql_store_result (mysql_db);
Apop_mstopif(!res_set,
if (callback == process_result_set_data || callback==process_result_set_data) apop_return_data_error('q')
else return NULL,
"mysql_store_result() failed");
if (!res_set->row_count) goto done; //just a blank table.
output = callback(mysql_db, res_set);
done:
mysql_free_result (res_set);
return output;
}
static double apop_mysql_query_to_float(char *query){
Areweconected(GSL_NAN);
Apop_mstopif(mysql_query (mysql_db, query) != 0, return GSL_NAN,
"mysql_query() failed");
MYSQL_RES *res_set = mysql_store_result (mysql_db);
Apop_mstopif(!res_set, return GSL_NAN, "mysql_store_result() failed");
if (mysql_num_rows(res_set)==0) return GSL_NAN;
MYSQL_ROW row = mysql_fetch_row (res_set);
Apop_mstopif(mysql_errno (mysql_db),
mysql_free_result (res_set); return GSL_NAN,
"mysql_fetch_row() failed");
double out = atof(row[0]);
mysql_free_result (res_set);
return out;
}
apop_data* apop_mysql_mixed_query(char const *intypes, char const *query){
Areweconected(NULL);
apop_data *out = NULL;
Apop_mstopif(mysql_query (mysql_db, query), return NULL, "mysql_query() failed");
MYSQL_RES *res_set = mysql_store_result(mysql_db);
MYSQL_ROW row;
Apop_mstopif(!res_set, return NULL, "mysql_store_result() failed");
if (!res_set->row_count) goto done; //just a blank table.
unsigned int total_cols = mysql_num_fields(res_set);
unsigned int total_rows = mysql_num_rows(res_set);
if (!total_cols || !total_rows) goto done;
apop_qt info = { };
count_types(&info, intypes); //in apop_db_sqlite.c
//intypes[5] === names, vectors, mcols, textcols, weights.
out = apop_data_alloc(info.intypes[1] ? total_rows : 0,
info.intypes[2] ? total_rows : 0,
info.intypes[2]);
int requested = info.intypes[0]+info.intypes[1]+info.intypes[2]+info.intypes[3]+info.intypes[4];
int excess = requested - total_cols;
Apop_stopif(excess > 0, out->error='d' /*and continue.*/, 1,
"you asked for %i columns in your list of types(%s), but your query produced %u columns. "
"The remainder will be placed in the text section. Output data set's ->error element set to 'd'." , requested, intypes, total_cols);
Apop_stopif(excess < 0, out->error='d' /*and continue.*/, 1,
"you asked for %i columns in your list of types(%s), but your query produced %u columns. "
"Ignoring the last %i type(s) in your list. Output data set's ->error element set to 'd'." , requested, intypes, total_cols, -excess);
if (info.intypes[3]||excess>0) apop_text_alloc(out, total_rows, info.intypes[3] + ((excess > 0) ? excess : 0));
if (info.intypes[4]) out->weights = gsl_vector_alloc(total_rows);
MYSQL_FIELD *fields = mysql_fetch_fields(res_set);
for (size_t i=0; i<total_cols; i++){
char c = (i < requested) ? intypes[i] : 't';
if (c == 't'|| c=='T')
apop_name_add(out->names, fields[i].name, 't');
else if (c == 'v'|| c=='V')
apop_name_add(out->names, fields[i].name, 'v');
else if (c == 'm'|| c=='M')
apop_name_add(out->names, fields[i].name, 'c');
}
for (int i=0; (row = mysql_fetch_row (res_set)); i++) {
int thism=0, thist=0;
for (size_t j=0; j<total_cols; j++){
char c = (j < requested) ? intypes[j] : 't';
if (c == 'n' || c =='N')
apop_name_add(out->names, row[j], 'r');
else if (c == 't'|| c=='T')
apop_text_set(out, i, thist++, "%s", (row[j]==NULL)? apop_opts.nan_string : row[j]);
else if (c == 'v'|| c=='V'){
double valor = (!row[j] || !strcmp(row[j], "NULL")) ? NAN : atof(row[j]);
gsl_vector_set(out->vector, i, valor);
} else if (c == 'w'|| c=='W'){
double valor = (!row[j] || !strcmp(row[j], "NULL")) ? NAN : atof(row[j]);
gsl_vector_set(out->weights, i, valor);
} else if (c == 'm'|| c=='M')
gsl_matrix_set(out->matrix, i , thism++, row[j] ? atof(row[j]): GSL_NAN);
}
}
done:
mysql_free_result (res_set);
return out;
}
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