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// =============================================================== //
// //
// File : adcache.cxx //
// Purpose : //
// //
// Institute of Microbiology (Technical University Munich) //
// http://www.arb-home.de/ //
// //
// =============================================================== //
#include "gb_storage.h"
#include "gb_main.h"
#include "gb_tune.h"
struct gb_cache_entry {
GBENTRY *gbe;
gb_cache_idx prev;
gb_cache_idx next;
char *data;
long clock;
size_t sizeof_data;
#if defined(GEN_CACHE_STATS)
long reused;
char *dbpath;
#endif // GEN_CACHE_STATS
};
inline bool entry_is_linked(gb_cache& cache, gb_cache_idx index) {
gb_cache_entry& entry = cache.entries[index];
return
(entry.prev || cache.newest_entry == index) &&
(entry.next || cache.oldest_entry == index);
}
inline gb_cache_entry& unlink_cache_entry(gb_cache& cache, gb_cache_idx index) {
gb_assert(entry_is_linked(cache, index));
gb_cache_entry& entry = cache.entries[index];
gb_cache_idx p = entry.prev;
gb_cache_idx n = entry.next;
if (index == cache.newest_entry) cache.newest_entry = n;
if (index == cache.oldest_entry) cache.oldest_entry = p;
cache.entries[n].prev = p;
cache.entries[p].next = n;
entry.prev = entry.next = 0;
return entry;
}
inline void link_cache_entry_to_top(gb_cache& cache, gb_cache_idx index) {
gb_assert(!entry_is_linked(cache, index));
gb_cache_entry& entry = cache.entries[index];
entry.prev = entry.next = 0;
if (!cache.newest_entry) { // first entry
gb_assert(!cache.oldest_entry);
cache.newest_entry = cache.oldest_entry = index;
}
else if (entry.sizeof_data >= cache.big_data_min_size) {
// Do NOT put big entries to top - instead put them to bottom!
// This is done to avoid that reading a big entry flushes the complete cache.
entry.prev = cache.oldest_entry;
cache.entries[entry.prev].next = index;
cache.oldest_entry = index;
}
else {
entry.next = cache.newest_entry;
cache.entries[entry.next].prev = index;
cache.newest_entry = index;
}
}
inline void flush_cache_entry(gb_cache& cache, gb_cache_idx index) {
gb_assert(!entry_is_linked(cache, index));
gb_cache_entry& entry = cache.entries[index];
freenull(entry.data);
cache.sum_data_size -= entry.sizeof_data;
gb_assert(entry.gbe->cache_index == index); // oops - cache error
entry.gbe->cache_index = 0;
// insert deleted entry in free list
entry.next = cache.firstfree_entry;
cache.firstfree_entry = index;
#if defined(GEN_CACHE_STATS)
// const char *dbpath = GB_get_db_path(entry.gbd);
if (entry.reused) {
GBS_incr_hash(cache.reused, entry.dbpath);
GBS_write_hash(cache.reuse_sum, entry.dbpath, GBS_read_hash(cache.reuse_sum, entry.dbpath)+entry.reused);
}
else {
GBS_incr_hash(cache.not_reused, entry.dbpath);
}
freenull(entry.dbpath);
#endif // GEN_CACHE_STATS
}
void gb_cache::init() {
if (!entries) {
entries = (gb_cache_entry *)GB_calloc(sizeof(gb_cache_entry), GB_MAX_CACHED_ENTRIES);
max_data_size = GB_TOTAL_CACHE_SIZE;
big_data_min_size = max_data_size / 4;
for (gb_cache_idx i=0; i<GB_MAX_CACHED_ENTRIES-1; i++) {
entries[i].next = i+1;
}
firstfree_entry = 1;
#if defined(GEN_CACHE_STATS)
not_reused = GBS_create_hash(1000, GB_MIND_CASE);
reused = GBS_create_hash(1000, GB_MIND_CASE);
reuse_sum = GBS_create_hash(1000, GB_MIND_CASE);
#endif // GEN_CACHE_STATS
}
}
#if defined(GEN_CACHE_STATS)
static long sum_hash_values(const char */*key*/, long val, void *client_data) {
size_t *sum = (size_t*)client_data;
*sum += val;
return val;
}
static long list_hash_entries(const char *key, long val, void *client_data) {
if (client_data) {
GB_HASH *reuse_sum_hash = (GB_HASH*)client_data;
long reuse_sum = GBS_read_hash(reuse_sum_hash, key);
printf("%s %li (%5.2f)\n", key, val, (double)reuse_sum/val);
}
else {
printf("%s %li\n", key, val);
}
return val;
}
#endif // GEN_CACHE_STATS
void gb_cache::destroy() {
if (entries) {
gb_assert(newest_entry == 0); // cache has to be flushed before!
gb_assert(sum_data_size == 0);
freenull(entries);
#if defined(GEN_CACHE_STATS)
size_t NotReUsed = 0;
size_t ReUsed = 0;
size_t ReUseSum = 0;
GBS_hash_do_loop(reuse_sum, sum_hash_values, &ReUseSum);
GBS_hash_do_loop(not_reused, sum_hash_values, &NotReUsed);
GBS_hash_do_loop(reused, sum_hash_values, &ReUsed);
size_t overall = NotReUsed+ReUsed;
printf("Cache stats:\n"
"Overall entries: %zu\n"
"Reused entries: %zu (%5.2f%%)\n"
"Mean reuse count: %5.2f\n",
overall,
ReUsed, (double)ReUsed/overall*100.0,
(double)ReUseSum/ReUsed);
printf("Not reused:\n");
GBS_hash_do_sorted_loop(not_reused, list_hash_entries, GBS_HCF_sortedByKey, NULL);
printf("Reused:\n");
GBS_hash_do_sorted_loop(reused, list_hash_entries, GBS_HCF_sortedByKey, reuse_sum);
GBS_free_hash(not_reused);
GBS_free_hash(reused);
GBS_free_hash(reuse_sum);
#endif // GEN_CACHE_STATS
}
}
char *gb_read_cache(GBENTRY *gbe) {
char *cached_data = NULL;
gb_cache_idx index = gbe->cache_index;
if (index) {
gb_cache& cache = GB_MAIN(gbe)->cache;
gb_cache_entry& entry = unlink_cache_entry(cache, index);
gb_assert(entry.gbe == gbe);
// check validity
if (gbe->update_date() > entry.clock) {
flush_cache_entry(cache, index);
}
else {
link_cache_entry_to_top(cache, index);
cached_data = entry.data;
#if defined(GEN_CACHE_STATS)
entry.reused++;
#endif // GEN_CACHE_STATS
}
}
return cached_data;
}
void gb_free_cache(GB_MAIN_TYPE *Main, GBENTRY *gbe) {
gb_cache_idx index = gbe->cache_index;
if (index) {
gb_cache& cache = Main->cache;
unlink_cache_entry(cache, index);
flush_cache_entry(cache, index);
}
}
static void gb_uncache(GBCONTAINER *gbc);
void gb_uncache(GBENTRY *gbe) { gb_free_cache(GB_MAIN(gbe), gbe); }
inline void gb_uncache(GBDATA *gbd) {
if (gbd->is_container()) gb_uncache(gbd->as_container());
else gb_uncache(gbd->as_entry());
}
static void gb_uncache(GBCONTAINER *gbc) {
for (GBDATA *gb_child = GB_child(gbc); gb_child; gb_child = GB_nextChild(gb_child)) {
gb_uncache(gb_child);
}
}
void GB_flush_cache(GBDATA *gbd) {
// flushes cache of DB-entry or -subtree
gb_uncache(gbd);
}
static char *cache_free_some_memory(gb_cache& cache, size_t needed_mem) {
// free up cache entries until
// - at least 'needed_mem' bytes are available and
// - at least one free cache entry exists
// (if one of the free'd entries has exactly 'needed_mem' bytes size,
// it will be returned and can be re-used or has to be freed)
long avail_mem = (long)cache.max_data_size - (long)cache.sum_data_size; // may be negative!
long need_to_free = needed_mem-avail_mem;
char *data = NULL;
// ignore really big requests (such cache entries will
// be appended to end of cache list and flushed quickly)
if (need_to_free>(long)cache.sum_data_size) need_to_free = 0;
while ((!cache.firstfree_entry || need_to_free>0) && cache.oldest_entry) {
gb_cache_idx index = cache.oldest_entry;
gb_assert(index);
gb_cache_entry& entry = unlink_cache_entry(cache, index);
need_to_free -= entry.sizeof_data;
if (entry.sizeof_data == needed_mem) reassign(data, entry.data);
flush_cache_entry(cache, index);
}
return data;
}
char *gb_alloc_cache_index(GBENTRY *gbe, size_t size) {
gb_assert(gbe->cache_index == 0);
gb_cache& cache = GB_MAIN(gbe)->cache;
char *data = cache_free_some_memory(cache, size);
gb_cache_idx index = cache.firstfree_entry;
gb_assert(index);
gb_cache_entry& entry = cache.entries[index];
cache.firstfree_entry = entry.next; // remove free element from free-list
entry.next = 0;
// create data
if (!data) data = (char*)malloc(size);
entry.sizeof_data = size;
entry.data = data;
entry.gbe = gbe;
entry.clock = gbe->update_date();
#if defined(GEN_CACHE_STATS)
entry.reused = 0;
entry.dbpath = strdup(GB_get_db_path(gbe));
#endif // GEN_CACHE_STATS
gbe->cache_index = index;
link_cache_entry_to_top(cache, index);
cache.sum_data_size += size;
return data;
}
char *GB_set_cache_size(GBDATA *gbd, size_t size) {
gb_cache& cache = GB_MAIN(gbd)->cache;
cache.max_data_size = size;
cache.big_data_min_size = cache.max_data_size / 4;
return 0;
}
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