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// =============================================================== //
// //
// File : ps_arb2asciipaths.cxx //
// Purpose : //
// //
// Coded by Wolfram Foerster in October 2002 //
// Institute of Microbiology (Technical University Munich) //
// http://www.arb-home.de/ //
// //
// =============================================================== //
#include "ps_filebuffer.hxx"
#include "ps_pg_tree_functions.hxx"
static IDVector *__PATH = new IDVector;
static void PS_print_paths(GBDATA *_pb_node) {
// recursively print the paths to the leafs
// number and species name
GBDATA *data = GB_entry(_pb_node, "num");
const char *buffer = GB_read_char_pntr(data);
SpeciesID id = atoi(buffer);
// probe(s)
GBDATA *pb_group = GB_entry(_pb_node, "group");
if (!pb_group) {
id = -id;
}
// path
__PATH->push_back(id);
// child(ren)
GBDATA *pb_child = PS_get_first_node(_pb_node);
if (pb_child) {
while (pb_child) {
PS_print_paths(pb_child);
pb_child = PS_get_next_node(pb_child);
}
}
else {
// print path in leaf nodes
printf("[%6zu] ", __PATH->size());
for (IDVectorCIter i=__PATH->begin(); i != __PATH->end(); ++i) {
printf("%6i ", *i);
}
printf("\n");
}
// path
__PATH->pop_back();
}
int main(int argc, char *argv[]) {
GB_ERROR error = 0;
if (argc < 2) {
error = GBS_global_string("Missing arguments\n Usage %s <input database name>", argv[0]);
}
else {
const char *input_DB_name = argv[1];
printf("Loading probe-group-database '%s'..\n", input_DB_name);
GBDATA *pb_main = GB_open(input_DB_name, "rwcN"); // open probe-group-database
if (!pb_main) error = GB_await_error();
else {
GB_transaction ta(pb_main);
GBDATA *group_tree = GB_entry(pb_main, "group_tree");
if (!group_tree) error = "no 'group_tree' in database";
else {
GBDATA *first_level_node = PS_get_first_node(group_tree);
if (!first_level_node) error = "no 'node' found in group_tree";
else {
printf("dumping probes... (starting with first toplevel nodes)\n");
// print 1st level nodes (and its subtrees)
do {
PS_print_paths(first_level_node);
first_level_node = PS_get_next_node(first_level_node);
}
while (first_level_node);
}
}
}
}
if (error) {
fprintf(stderr, "Error in %s: %s\n", argv[0], error);
return EXIT_FAILURE;
}
return EXIT_SUCCESS;
}
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