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#ifndef BASE_H
#define BASE_H
#ifndef DEFINES_H
#include "defines.h"
#endif
enum BaseType {
BASE_A,
BASE_C,
BASE_G,
BASE_T,
BASE_DEL
};
#define BASETYPES 4
#define BASECHARS (BASETYPES+1)
#define BASEQUAD (BASETYPES*BASETYPES)
#define MAXBASECHAR ((int)'t') // vom ASCII-Wert her groesstes Zeichen
#define PROB_NOT_DEF (-1.0)
#define isDeleted(b) (charIsDelete[(int)(b)])
#define isHelical(b) (charIsHelical[(int)(b)])
#define isPairing(b1, b2) (basesArePairing[(int)(b1)][(int)(b2)])
extern char helixBaseChar[BASECHARS],
loopBaseChar[BASECHARS];
extern int basesArePairing[BASECHARS][BASECHARS], // Kombination paarend?
baseCharType[],
charIsDelete[],
charIsHelical[];
#define char2BaseType(c) ((enum BaseType)baseCharType[(int)c])
#ifdef __cplusplus
extern "C" {
#endif
void initBaseLookups ();
#ifdef __cplusplus
}
#endif
#endif
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