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.PHONY: help all develall mafftlinks scriptlinks devellinks clean cleanbinaries cleanlinks
help:
@echo 'Known targets:'
@echo ''
@echo ' all create all links to binaries in: SH PERL_SCRIPTS'
@echo ' develall create links to arb_binaries in: SOURCE_TOOLS (development only)'
@echo ' clean: remove all executables and links'
@echo ' cleanlinks: remove all links'
# ----------------------------------------
all: cleanlinks
$(MAKE) scriptlinks
develall: cleanlinks
$(MAKE) scriptlinks devellinks
# ----------------------------------------
MAFFTLINKS= \
mafft-einsi \
mafft-fftns \
mafft-fftnsi \
mafft-ginsi \
mafft-linsi \
mafft-nwns \
mafft-nwnsi \
mafft-qinsi \
mafft-xinsi \
mafft-%:
ln -s -f mafft $@
mafftlinks: $(MAFFTLINKS)
scriptlinks:
ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
devellinks:
ln -s -f `find ../SOURCE_TOOLS -name "arb_*" -perm -100 ! -type d -print` .
# ----------------------------------------
clean: cleanlinks cleanbinaries
cleanbinaries:
-find . -type f -perm -100 -exec rm {} \;
cleanlinks:
-find . -type l -exec rm {} \;
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