1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
|
%time cumsecs #call ms/call name
8 22.3 990.433893803 0.25 _PT_add_to_chain__FP11PTMM_structP15POS_TREE_structiN23
8 16.6 1726.244314622 0.17 _PT_size_of_chain_entries__FPc
8 15.7 2424.41499924499 0.00 _PT_WRITE_CHAIN_ENTRY__FPciN32
6.8 2726.47 mcount
8 6.3 3007.72 92977 3.02 _gb_uncompress_huffmann
2 4.0 3183.04141270061 0.00 _PT_read_son__FP11PTMM_structP15POS_TREE_struct13PT_bases_enum
# 3.8 3353.43116684550 0.00 _get_abs_align_pos__FPci
8 2.9 3483.37 1 129940.00 _enter_stage_1_build_tree__FP14struct_PT_mainPc
# 2.2 3581.45100836149 0.00 _PT_read_type__FP15POS_TREE_struct
2.2 3677.934585865 0.02 _build_pos_tree__FP15POS_TREE_structiN32
2.2 3774.28 92977 1.04 _gb_uncompress_equal_bytes
1.9 3859.457931292 0.01 _memcpy
1.6 3931.014647722 0.02 _strlen
1.3 3986.894514357 0.01 _PT_create_leaf__FP11PTMM_structPP15POS_TREE_struct13PT_bases_enumiN24
0.9 4027.9023260153 0.00 _strncmp
0.9 4066.6312233324 0.00 _PT_change_father__FP15POS_TREE_structN21
0.8 4103.223404352 0.01 _PTD_write_node_to_disk__FP6_iobufP11PTMM_structP15POS_TREE_structPil
0.8 4139.5016747687 0.00 _PTM_get_mem__Fi
0.8 4175.5316747686 0.00 _PTM_free_mem__FPci
0.7 4207.7612233324 0.00 _PT_GET_CODE2__FP15POS_TREE_structi
0.6 4236.561808631 0.02 _bzero
0.6 4264.154593186 0.01 _PTD_write_leafs_to_disk__FP6_iobufP11PTMM_structP15POS_TREE_structiPiT5
0.4 4283.71 ___dt__14GB_transactionFv
0.4 4300.9916237136 0.00 _memset
0.4 4317.44 _malloc
0.4 4333.73 420819 0.04 _PTD_write_chain_to_disk__FP6_iobufP11PTMM_structP15POS_TREE_structl
0.3 4348.184514382 0.00 _PTD_clear_fathers__FP11PTMM_structP15POS_TREE_struct
0.3 4362.33 _free
0.2 4371.343404352 0.00 _PT_change_leaf_to_node__FP11PTMM_structP15POS_TREE_struct
0.2 4379.87 3576 2.39 _probe_compress_sequence__FPc
0.1 4385.844514357 0.00 _PTD_set_object_to_saved_status__FP15POS_TREE_structli
0.1 4391.754021272 0.00 _gb_give_buffer
0.1 4397.51 689186 0.01 _PTD_write_tip_to_disk__FP6_iobufP11PTMM_structP15POS_TREE_structl
0.1 4401.28 4448 0.85 _write
0.1 4404.59 92978 0.04 _gb_build_uncompress_tree
0.1 4407.511297822 0.00 _gbm_get_mem
0.1 4410.321811075 0.00 .umul
0.1 4412.80 420819 0.01 _PT_leaf_to_chain__FP11PTMM_structP15POS_TREE_struct
0.0 4414.93 8701 0.24 _gb_read_bin_rek
0.0 4417.001808631 0.00 _calloc
0.0 4419.04 _realloc
0.0 4420.991238445 0.00 _gbm_free_mem
0.0 4422.591187083 0.00 _PT_read_apos__FP11PTMM_structP15POS_TREE_struct
0.0 4424.14 393395 0.00 _GB_find
0.0 4425.611238445 0.00 _gb_free_compress_tree
0.0 4426.731187083 0.00 _PT_read_rpos__FP11PTMM_structP15POS_TREE_struct
0.0 4427.541187083 0.00 _PT_read_name__FP11PTMM_structP15POS_TREE_struct
0.0 4428.35 89400 0.01 _probe_read_alignment__FiPi
0.0 4429.07 92976 0.01 _probe_read_string_append_point__FP17gb_data_base_typePi
0.0 4429.74 100139 0.01 _GB_read_char_pntr
0.0 4430.32 100130 0.01 _GB_read_string
0.0 4430.83 150371 0.00 _PTD_put_short__FP6_iobufUl
0.0 4431.26 55732 0.01 _gb_link_entry
0.0 4431.67 2447 0.17 _sbrk
0.0 4432.06 229078 0.00 _strcmp
0.0 4432.41 92977 0.00 _gb_uncompress_bytes
0.0 4432.69 92976 0.00 _GB_read_string_count
0.0 4432.96 551 0.49 _read
0.0 4433.21 126091 0.00 _gbs_malloc_copy
0.0 4433.45 57918 0.00 _PTD_put_int__FP6_iobufUl
0.0 4433.63 92977 0.00 _gb_give_buffer2
0.0 4433.80 92977 0.00 _gb_give_other_buffer
0.0 4433.94 47031 0.00 _gb_make_entry
0.0 4434.07 92996 0.00 .rem
0.0 4434.18 32807 0.00 _gb_read_in_long
0.0 4434.23 1287 0.04 __doprnt
0.0 4434.26 8701 0.00 _gb_make_container
0.0 4434.29 1 30.00 _probe_read_alignments__Fv
0.0 4434.31 3167 0.01 __flsbuf
0.0 4434.33 4 5.00 _close
0.0 4434.35 3596 0.01 _gbs_hash_index
0.0 4434.37 1281 0.02 _printf
0.0 4434.39 3793 0.01 _strcpy
0.0 4434.40 .div
0.0 4434.41 3576 0.00 _GBS_write_hash_no_strdup
0.0 4434.42 7152 0.00 _GBT_next_species
0.0 4434.43 1 10.00 _PT_init_count_bits__Fv
0.0 4434.44 4449 0.00 __xflsbuf
0.0 4434.45 5107 0.00 _fread
0.0 4434.46 3 3.33 _fstat
0.0 4434.47 6 1.67 _open
0.0 4434.48 3790 0.00 _strdup
0.0 4434.48 5107 0.00 .mul
0.0 4434.48 3146 0.00 .udiv
0.0 4434.48 310 0.00 .udiv_o3
0.0 4434.48 702 0.00 .urem
0.0 4434.48 2 0.00 _GBS_create_hash
0.0 4434.48 1 0.00 _GBS_find_lib_file
0.0 4434.48 4 0.00 _GBS_find_string
0.0 4434.48 1 0.00 _GBS_read_arb_tcp
0.0 4434.48 9 0.00 _GBS_string_cmp
0.0 4434.48 1 0.00 _GBS_string_eval
0.0 4434.48 20 0.00 _GBS_write_hash
0.0 4434.48 1 0.00 _GBT_find_extended
0.0 4434.48 1 0.00 _GBT_find_species
0.0 4434.48 2 0.00 _GBT_first_species
0.0 4434.48 1 0.00 _GBT_get_default_alignment
0.0 4434.48 1 0.00 _GBT_get_default_ref
0.0 4434.48 1 0.00 _GBT_read_sequence
0.0 4434.48 5 0.00 _GB_begin_transaction
0.0 4434.48 5 0.00 _GB_commit_transaction
0.0 4434.48 1 0.00 _GB_get_father
0.0 4434.48 1 0.00 _GB_install_command_table
0.0 4434.48 2 0.00 _GB_install_pid
0.0 4434.48 1 0.00 _GB_login
0.0 4434.48 1 0.00 _GB_open
0.0 4434.48 2 0.00 _GB_search
0.0 4434.48 1 0.00 _GB_set_mode_of_file
0.0 4434.48 26 0.00 _PTD_debug_nodes__Fv
0.0 4434.48 76 0.00 _PTD_save_partial_tree__FP6_iobufP11PTMM_structP15POS_TREE_structPcilPi
0.0 4434.48 26 0.00 _PTM_debug_mem__Fv
0.0 4434.48 1 0.00 _PT_build_species_hash__Fv
0.0 4434.48 25 0.00 _PT_inc_base_string_count__FPccT2i
0.0 4434.48 1 0.00 _PT_init__Fi
0.0 4434.48 1 0.00 _PT_init_base_string_counter__FPcci
0.0 4434.48 1 0.00 ___ct__12BI_ecoli_refFv
0.0 4434.48 3 0.00 ___dl__FPv
0.0 4434.48 1 0.00 ___dtors__Fv
0.0 4434.48 5 0.00 ___nw__FUi
0.0 4434.48 310 0.00 ___quorem10000
0.0 4434.48 1 0.00 ___start_libm
0.0 4434.48 1 0.00 ___sti__PT_main_cxx_pt_init_main_struct_
0.0 4434.48 551 0.00 __filbuf
0.0 4434.48 4 0.00 __findbuf
0.0 4434.48 6 0.00 __findiop
0.0 4434.48 1 0.00 __main
0.0 4434.48 2 0.00 __wrtchk
0.0 4434.48 1 0.00 _arb_trace_argv
0.0 4434.48 1 0.00 _chmod
0.0 4434.48 1 0.00 _exit
0.0 4434.48 1 0.00 _exit__12BI_ecoli_refFv
0.0 4434.48 4 0.00 _fclose
0.0 4434.48 4 0.00 _fflush
0.0 4434.48 32 0.00 _fgets
0.0 4434.48 6 0.00 _fopen
0.0 4434.48 6 0.00 _freopen
0.0 4434.48 1 0.00 _gb_build_compress_list
0.0 4434.48 5 0.00 _gb_commit_transaction_local_rek
0.0 4434.48 10 0.00 _gb_do_callback_list
0.0 4434.48 1 0.00 _gb_init_gb
0.0 4434.48 1 0.00 _gb_make_gb_main_type
0.0 4434.48 1 0.00 _gb_read_bin
0.0 4434.48 5 0.00 _gb_untouch
0.0 4434.48 1 0.00 _gbcm_login
0.0 4434.48 1 0.00 _gbl_install_standard_commands
0.0 4434.48 1 0.00 _gbs_build_replace_string
0.0 4434.48 16 0.00 _gbs_chrcat
0.0 4434.48 1 0.00 _gbs_compress_command
0.0 4434.48 1 0.00 _gbs_strcat
0.0 4434.48 1 0.00 _gbs_strclose
0.0 4434.48 1 0.00 _gbs_strncat
0.0 4434.48 1 0.00 _gbs_stropen
0.0 4434.48 9 0.00 _getenv
0.0 4434.48 1 0.00 _getpagesize
0.0 4434.48 2 0.00 _getpid
0.0 4434.48 1 0.00 _init__12BI_ecoli_refFPcl
0.0 4434.48 4 0.00 _ioctl
0.0 4434.48 4 0.00 _isatty
0.0 4434.48 1287 0.00 _localeconv
0.0 4434.48 1 0.00 _main
0.0 4434.48 32 0.00 _memccpy
0.0 4434.48 1281 0.00 _memchr
0.0 4434.48 1 0.00 _on_exit
0.0 4434.48 1 0.00 _probe_read_data_base__FPc
0.0 4434.48 1 0.00 _profil
0.0 4434.48 1 0.00 _pt_init_main_struct__FP14struct_PT_mainPc
0.0 4434.48 6 0.00 _sprintf
0.0 4434.48 13 0.00 _strchr
0.0 4434.48 3 0.00 _strpbrk
0.0 4434.48 2 0.00 _strrchr
0.0 4434.48 3 0.00 _strspn
0.0 4434.48 4 0.00 _strtok
|
