1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
|
Source: ariba
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
python3-biopython,
python3-all-dev,
python3-dendropy,
python3-setuptools,
python3-pymummer (>= 0.10.2),
python3-pysam (>= 0.9.1),
python3-nose (>= 1.3),
python3-bs4,
python3-matplotlib,
python3-tk,
bowtie2 (>= 2.1.0),
cd-hit,
mash,
libminimap-dev,
libfml-dev (>= 0.1-4~),
mummer,
fastaq (>= 3.12.0),
help2man,
asciidoctor,
spades [amd64] <!nocheck>
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/ariba
Vcs-Git: https://salsa.debian.org/med-team/ariba.git
Homepage: https://github.com/sanger-pathogens/ariba
Package: ariba
Architecture: any
Depends: ${misc:Depends},
${python3:Depends},
${shlibs:Depends},
bowtie2 (>= 2.1.0),
cd-hit,
mash,
libfml0 (>= 0.1-4~),
libminimap0,
mummer,
python3-biopython,
python3-dendropy,
python3-pymummer (>= 0.10.2),
python3-pysam (>= 0.9.1),
python3-matplotlib,
python3-tk,
fastaq (>= 3.12.0)
Suggests: spades
Description: Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local
assemblies.
The input is a FASTA file of reference genes and paired sequencing reads. ARIBA
reports which of the reference genes were found, plus detailed information on
the quality of the assemblies and any variants between the sequencing reads
and the reference genes.
|
