1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
|
Description: Fix Python3.12 syntax warnings
Bug-Debian: https://bugs.debian.org/1085332
Author: Andreas Tille <tille@debian.org>
Last-Update: 2024-12-04
--- a/ariba/external_progs.py
+++ b/ariba/external_progs.py
@@ -30,10 +30,10 @@ prog_to_env_var = {x: 'ARIBA_' + x.upper
# ... make the regex permissive and hope things
# still work for later versions
prog_to_version_cmd = {
- 'bowtie2': ('--version', re.compile('.*bowtie2.*version (.*)$')),
- 'cdhit': ('', re.compile('CD-HIT version ([0-9\.]+) \(')),
- 'nucmer': ('--version', re.compile('([0-9]+\.[0-9\.]+.*$)')),
- 'spades': ('--version', re.compile('SPAdes.*v([0-9\.]+)'))
+ 'bowtie2': ('--version', re.compile(r'.*bowtie2.*version (.*)$')),
+ 'cdhit': ('', re.compile(r'CD-HIT version ([0-9\.]+) \(')),
+ 'nucmer': ('--version', re.compile(r'([0-9]+\.[0-9\.]+.*$)')),
+ 'spades': ('--version', re.compile(r'SPAdes.*v([0-9\.]+)'))
}
|
