1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
|
/*
* Copyright (c) 2006 Genome Research Limited.
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU Library General Public License as published
* by the Free Software Foundation; either version 2 of the License or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Library General Public License for more details.
*
* You should have received a copy of the GNU Library General Public License
* along with this program; see the file COPYING.LIB. If not, write to
* the Free Software Foundation Inc., 59 Temple Place - Suite 330,
* Boston, MA 02111-1307 USA
*/
package org.gmod.schema.dao;
import org.gmod.schema.analysis.AnalysisFeature;
import org.gmod.schema.general.Db;
import org.gmod.schema.general.DbXRef;
import org.gmod.schema.sequence.Feature;
public interface GeneralDaoI extends BaseDaoI{
/**
* Retrieve a database by name
*
* @param name the name to lookup
* @return the corresponding db, or null
*/
public abstract Db getDbByName(String name);
/**
* Retrieve the db xref corresponding to a given DB and accession number
*
* @param db the db the dbxref refers to
* @param accession the accession "number" the dbxref refers to
* @return the dbxref, or null
*/
public abstract DbXRef getDbXRefByDbAndAcc(Db db, String accession);
/**
* Retrieve the analysisfeature corresponding to the given feature
*
* @param feature the feature whose analysisfeature has to be found
* @return the analysisfeature
*/
public abstract AnalysisFeature getAnalysisFeatureFromFeature(Feature feature);
}
|
