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/*
* Copyright (c) 2006 Genome Research Limited.
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU Library General Public License as published
* by the Free Software Foundation; either version 2 of the License or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Library General Public License for more details.
*
* You should have received a copy of the GNU Library General Public License
* along with this program; see the file COPYING.LIB. If not, write to
* the Free Software Foundation Inc., 59 Temple Place - Suite 330,
* Boston, MA 02111-1307 USA
*/
package org.gmod.schema.dao;
import org.gmod.schema.cv.CvTerm;
import org.gmod.schema.phylogeny.Phylonode;
import org.gmod.schema.phylogeny.Phylotree;
import java.util.List;
public interface PhylogenyDaoI extends BaseDaoI {
public Phylotree getPhyloTreeByName(String name);
public List<Phylonode> getPhyloNodesByCvTermInTree(CvTerm type, Phylotree tree);
public List<Phylonode> getAllPhylonodes();
public List<Phylonode> getPhylonodeByDepthAndParent(double depth,Phylonode parent);
public List<Phylonode> getPhylonodeByName(String name);
public List<Phylonode> getPhylonodesByParent(Phylonode parent);
//public List<Phylonode> getPhylonodeByDepth(double depth);
}
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