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<?xml version="1.0" encoding="UTF-8" ?>
<!DOCTYPE sqlMap
PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN"
"http://ibatis.apache.org/dtd/sql-map-2.dtd">
<sqlMap namespace="FeatureSynonym">
<typeAlias alias="FeatureSynonym"
type="org.gmod.schema.sequence.FeatureSynonym"/>
<typeAlias alias="Feature"
type="org.gmod.schema.sequence.Feature"/>
<typeAlias alias="Synonym"
type="org.gmod.schema.sequence.Synonym"/>
<resultMap id="map-featuresynonyms" class="Feature" groupBy="featureId" >
<result property="featureId" column="feature_id"/>
<result property="featureSynonyms" resultMap="map-alias" />
</resultMap>
<resultMap id="map-alias"
class="FeatureSynonym">
<result property="feature.featureId" column="feature_id"/>
<result property="pub.pubId" column="pub_id"/>
<result property="current" column="is_current"/>
<result property="internal" column="is_internal"/>
<result property="synonym.synonymId" column="synonym_id"/>
<result property="synonym.name" column="name"/>
<result property="synonym.synonymSgml" column="synonym_sgml"/>
<result property="synonym.cvTerm.cvTermId" column="type_id" />
</resultMap>
<resultMap id="map-alias-part-lazy"
class="FeatureSynonym">
<result property="feature.featureId" column="feature_id"/>
<result property="pub.pubId" column="pub_id"/>
<result property="current" column="is_current"/>
<result property="internal" column="is_internal"/>
<result property="synonym" column="synonym_id" select="getSynonymBySynonymId"/>
</resultMap>
<resultMap id="map-alias-part-lazy2"
class="FeatureSynonym">
<result property="feature.featureId" column="feature_id"/>
<result property="pub.pubId" column="pub_id"/>
<result property="current" column="is_current"/>
<result property="internal" column="is_internal"/>
<result property="synonym" resultMap="Synonym.map-synonym-lazy"/>
</resultMap>
<resultMap id="map-alias-lazy"
class="FeatureSynonym">
<result property="feature.featureId" column="feature_id"/>
<result property="pub.pubId" column="pub_id"/>
<result property="current" column="is_current"/>
<result property="internal" column="is_internal"/>
<result property="synonym" column="synonym_id" select="getSynonymBySynonymId"/>
</resultMap>
<!-- SQL -->
<select id="getAllFeatureSynonymsAsFeature" resultMap="map-featuresynonyms">
SELECT fs.*, s.name, s.synonym_sgml, s.type_id, s.synonym_id
FROM feature_synonym fs
LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id
</select>
<select id="getFeatureSynonymsByUniquename" resultMap="map-alias"
parameterClass="Feature">
SELECT fs.*, s.name, s.synonym_sgml, s.type_id
FROM feature_synonym fs
LEFT JOIN feature f ON f.feature_id=fs.feature_id
LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id
<isNotNull property="uniqueName">
WHERE uniquename=#uniqueName#
</isNotNull>
</select>
<select id="getFeatureSynonymsBySrcFeature" resultMap="map-alias"
parameterClass="Feature">
SELECT fs.*, s.name, s.synonym_sgml, s.type_id
FROM feature_synonym fs
LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id
LEFT JOIN featureloc fl ON fl.feature_id=fs.feature_id AND srcfeature_id=$featureId$
WHERE srcfeature_id=$featureId$
<isGreaterThan property="featureLoc.fmin" compareValue="0" prepend="AND">
<![CDATA[ fl.fmin > $featureLoc.fmin$ AND fl.fmax < $featureLoc.fmax$ ]]>
</isGreaterThan>
<!--
SELECT fs.*, s.name, s.synonym_sgml, s.type_id
FROM feature_synonym fs
LEFT JOIN feature f ON f.feature_id=fs.feature_id
LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id
WHERE f.feature_id IN
(SELECT feature_id FROM featureloc fl WHERE srcfeature_id=$featureId$
<isGreaterThan property="featureLoc.fmin" compareValue="0" prepend="AND">
<![CDATA[ fl.fmin > $featureLoc.fmin$ AND fl.fmax < $featureLoc.fmax$ ]]>
</isGreaterThan>)
-->
</select>
<select id="getFeatureSynonymsByFeatureIds" resultMap="map-alias-part-lazy2">
SELECT fs.*, s.name, s.synonym_sgml, s.type_id
FROM feature_synonym fs
LEFT JOIN synonym s ON fs.synonym_id=s.synonym_id
WHERE fs.feature_id IN
<iterate open="(" close=")" conjunction=","> $[]$ </iterate>
</select>
<select id="getLazyFeatureSynonymsByUniquename" resultMap="map-alias-part-lazy"
parameterClass="FeatureSynonym">
SELECT fs.*
FROM feature_synonym fs
LEFT JOIN feature f ON f.feature_id=fs.feature_id
<isNotNull property="feature.uniqueName">
WHERE uniquename=#feature.uniqueName#
</isNotNull>
</select>
<select id="getFeatureSynonymsByName" resultMap="map-alias-lazy"
parameterClass="Synonym">
SELECT * FROM feature_synonym
WHERE
synonym_id=
( SELECT synonym_id FROM synonym WHERE name=#name#
<isNotNull property="cvTerm"> AND type_id=#cvTerm.cvTermId# </isNotNull> )
</select>
<!-- WRITE BACK -->
<delete id="deleteFeatureAlias" parameterClass="FeatureSynonym">
DELETE FROM feature_synonym WHERE
synonym_id=$synonym.synonymId$ AND
feature_id=(SELECT feature_id FROM feature WHERE
uniquename=#feature.uniqueName#)
</delete>
<insert id="insertFeatureAlias" parameterClass="FeatureSynonym">
INSERT INTO feature_synonym
( synonym_id, feature_id, pub_id, is_current )
VALUES ( $synonym.synonymId$ ,
(SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#),
1, #current# )
</insert>
</sqlMap>
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