File: missing_htsjdk_dependency_in_pom.patch

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Description: adding missing dependency on htsjdk in pom
Author: Pierre Gruet <pgt@debian.org>
Forwarded: https://github.com/sanger-pathogens/Artemis/issues/313
Last-Update: 2020-09-04

--- a/pom.xml
+++ b/pom.xml
@@ -295,6 +295,12 @@
                     <scope>system</scope>
                     <systemPath>/usr/share/java/picard.jar</systemPath>
 		</dependency>
+
+                <dependency>
+                    <groupId>com.github.samtools</groupId>
+                    <artifactId>htsjdk</artifactId>
+                    <version>debian</version>
+                </dependency>
 				
 		<!--  Testing only -->