1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
|
#!/bin/bash
##################################################
# Script that can be used to set up specific #
# environment variables for Artemis and related #
# applications. #
# Uncomment as required and either run from your #
# shell .profile or copy and paste the variables #
# directly into your shell profile. #
# #
##################################################
#
# Set the location of a specific JRE to use
# for all Artemis related applications.
#
#export ARTEMIS_JAVA_JRE=
#
# Set specific java JVM flags for memory management etc.
#
#export ARTEMIS_JVM_FLAGS=
#
# Chado database connectivity.
#
#export PGHOST=
#export PGPORT=
#export PGDATABASE=
#export PGUSER=
########### Variables for locally installed Blast databases ##############
#
# Use the following path setting to specify
# where blast+ executables can be found.
# Change as required.
#
#export PATH=/usr/local/ncbi/blast/bin/:$PATH
#
# Specify locally installed Blast databases.
# [See NCBI Blast+ documentation]
# e.g. /data/blastdb/Supported/UNIPROT/current:/data/blastdb/Supported/EMBL/current/con etc
#
#export BLASTDB=
|
