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Source: artfastqgenerator
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
javahelper,
default-jdk
Standards-Version: 3.9.7
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/artfastqgenerator.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/artfastqgenerator.git
Homepage: https://sourceforge.net/projects/artfastqgen/
Package: artfastqgenerator
Architecture: all
Depends: ${java:Depends},
${misc:Depends}
Description: ouputs artificial FASTQ files derived from a reference genome
ArtificialFastqGenerator takes the reference genome (in FASTA format) as
input and outputs artificial FASTQ files in the Sanger format. It can
accept Phred base quality scores from existing FASTQ files, and use them
to simulate sequencing errors. Since the artificial FASTQs are derived
from the reference genome, the reference genome provides a gold-standard
for calling variants (Single Nucleotide Polymorphisms (SNPs) and
insertions and deletions (indels)). This enables evaluation of a Next
Generation Sequencing (NGS) analysis pipeline which aligns reads to the
reference genome and then calls the variants.
Package: artfastqgenerator-doc
Architecture: all
Section: doc
Depends: ${misc:Depends}
Description: ouputs artificial FASTQ files derived from a reference genome (doc)
ArtificialFastqGenerator takes the reference genome (in FASTA format) as
input and outputs artificial FASTQ files in the Sanger format. It can
accept Phred base quality scores from existing FASTQ files, and use them
to simulate sequencing errors. Since the artificial FASTQs are derived
from the reference genome, the reference genome provides a gold-standard
for calling variants (Single Nucleotide Polymorphisms (SNPs) and
insertions and deletions (indels)). This enables evaluation of a Next
Generation Sequencing (NGS) analysis pipeline which aligns reads to the
reference genome and then calls the variants.
.
This package contains the Java API documentation for artfastqgenerator.
Package: artfastqgenerator-examples
Architecture: all
Depends: ${misc:Depends}
Description: ouputs artificial FASTQ files derived from a reference genome (examples)
ArtificialFastqGenerator takes the reference genome (in FASTA format) as
input and outputs artificial FASTQ files in the Sanger format. It can
accept Phred base quality scores from existing FASTQ files, and use them
to simulate sequencing errors. Since the artificial FASTQs are derived
from the reference genome, the reference genome provides a gold-standard
for calling variants (Single Nucleotide Polymorphisms (SNPs) and
insertions and deletions (indels)). This enables evaluation of a Next
Generation Sequencing (NGS) analysis pipeline which aligns reads to the
reference genome and then calls the variants.
.
This package contains example data for artfastqgenerator.
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