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<h2 class="title">S</h2>
<dl>
<dt><span class="strong"><a href="../artificialFastqGenerator/Nucleobase.html#setGenotype(char)">setGenotype(char)</a></span> - Method in class artificialFastqGenerator.<a href="../artificialFastqGenerator/Nucleobase.html" title="class in artificialFastqGenerator">Nucleobase</a></dt>
<dd>
<div class="block">Set the nucleobase's genotype.</div>
</dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/Read.html#setLeftReadAndNeedsWriting(boolean)">setLeftReadAndNeedsWriting(boolean)</a></span> - Method in class artificialFastqGenerator.<a href="../artificialFastqGenerator/Read.html" title="class in artificialFastqGenerator">Read</a></dt>
<dd>
<div class="block">Set whether the Read object is a left read and needs writing.</div>
</dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/Read.html#setPairedEndRead(artificialFastqGenerator.Read)">setPairedEndRead(Read)</a></span> - Method in class artificialFastqGenerator.<a href="../artificialFastqGenerator/Read.html" title="class in artificialFastqGenerator">Read</a></dt>
<dd>
<div class="block">Set the read with which this read object forms a pair.</div>
</dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/ArtificialFastqGenerationUtils.html#setRedundantReadToNull(T)">setRedundantReadToNull(T)</a></span> - Static method in class artificialFastqGenerator.<a href="../artificialFastqGenerator/ArtificialFastqGenerationUtils.html" title="class in artificialFastqGenerator">ArtificialFastqGenerationUtils</a></dt>
<dd>
<div class="block">Set the sequence field of Read and BabyRead objects to null and then also set the object to null.</div>
</dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/AbstractRead.html#setSequence(java.util.ArrayList)">setSequence(ArrayList<Nucleobase>)</a></span> - Method in class artificialFastqGenerator.<a href="../artificialFastqGenerator/AbstractRead.html" title="class in artificialFastqGenerator">AbstractRead</a></dt>
<dd>
<div class="block">Set the sequence of nucleobases from the reference genome which this Read object is a read of.</div>
</dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/Nucleobase.html#setTargetCoverage(int)">setTargetCoverage(int)</a></span> - Method in class artificialFastqGenerator.<a href="../artificialFastqGenerator/Nucleobase.html" title="class in artificialFastqGenerator">Nucleobase</a></dt>
<dd>
<div class="block">Set the target coverage for this nucleobase (the number of reads we want to include
this nucleobase).</div>
</dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/Main.html#simulateErrorInRead">simulateErrorInRead</a></span> - Static variable in class artificialFastqGenerator.<a href="../artificialFastqGenerator/Main.html" title="class in artificialFastqGenerator">Main</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/Main.html#startingX">startingX</a></span> - Static variable in class artificialFastqGenerator.<a href="../artificialFastqGenerator/Main.html" title="class in artificialFastqGenerator">Main</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/Main.html#startingY">startingY</a></span> - Static variable in class artificialFastqGenerator.<a href="../artificialFastqGenerator/Main.html" title="class in artificialFastqGenerator">Main</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="../artificialFastqGenerator/Main.html#startSequenceIdentifier">startSequenceIdentifier</a></span> - Static variable in class artificialFastqGenerator.<a href="../artificialFastqGenerator/Main.html" title="class in artificialFastqGenerator">Main</a></dt>
<dd> </dd>
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