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cmake_minimum_required (VERSION 2.6)
project (assembly-stats)
set (CMAKE_CXX_FLAGS "-Wall -g -O3 -pthread")
file(COPY test_files DESTINATION ${CMAKE_CURRENT_BINARY_DIR})
#add_subdirectory(gtest-1.7.0)
option(BUILD_TESTS "Parameter to enable/disable build time tests" ON)
if(BUILD_TESTS)
enable_testing()
include_directories(/usr/include/gtest)
add_executable(runUnitTests fasta_unittest.cpp fastq_unittest.cpp filetype_unittest.cpp stats_unittest.cpp)
target_link_libraries(runUnitTests gtest gtest_main fasta fastq filetype stats)
add_test(runUnitTests runUnitTests)
endif()
add_library(fasta fasta.cpp)
add_library(fastq fastq.cpp)
add_library(filetype filetype.cpp)
add_library(stats stats.cpp)
target_link_libraries(stats fasta fastq filetype)
add_executable(assembly-stats assembly-stats.cpp)
target_link_libraries(assembly-stats stats)
set(INSTALL_DIR /usr/local/bin CACHE PATH "Installation directory for executables")
install(TARGETS assembly-stats DESTINATION ${INSTALL_DIR})
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