File: .gitignore

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augur 11.0.0-1
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# For augur repo #
environment*
temp*
results*
dengue/utils/
prepared/
processed/
auspice/
test_input/
test_output/
scratch/
s3/
build/
dist/
.snakemake
*stderr
/docs/_build/

# For Python #
##############
*.pyc
__pycache__/
.cache/
.coverage
htmlcov/
augur.egg-info/
.mypy_cache/
nextstrain_augur.egg-info/
env/
.pytest_cache

# Compiled source #
###################
*.com
*.class
*.dll
*.exe
*.o
*.so

# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
Icon?
ehthumbs.db
Thumbs.db

# autosave #
############
*~

# IDE #
#######
*sublime*
.vscode

# slurm logs
builds/flu/slurm_log/*