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# Augur manuscript
## Setup
``` bash
conda create -n augur-manuscript graphviz pandoc
conda activate augur-manuscript
```
## Compile manuscript
Use pandoc to compile the paper.
```bash
make
```
Alternately, use [JOSS's Docker image to compile the paper](https://joss.readthedocs.io/en/latest/submitting.html#docker) from this `paper` directory.
``` bash
docker run --rm \
--volume $PWD:/data \
--user $(id -u):$(id -g) \
--env JOURNAL=joss \
openjournals/paperdraft
```
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