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augur 24.4.0-3
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  • area: main
  • in suites: forky, sid
  • size: 25,312 kB
  • sloc: python: 14,253; sh: 227; makefile: 35

Folder: cram

d .. (parent)
- - rw-r--r-- 56 _setup.sh
- - rw-r--r-- 1,748 filter-empty-output-reporting.t
- - rw-r--r-- 566 filter-exclude-ambiguous-dates-by.t
- - rw-r--r-- 556 filter-exclude-include.t
- - rw-r--r-- 751 filter-exclude-where-multiple.t
- - rw-r--r-- 857 filter-file-encoding-error.t
- - rw-r--r-- 1,597 filter-force-include-no-duplicates.t
- - rw-r--r-- 412 filter-max-date.t
- - rw-r--r-- 661 filter-metadata-date-formats.t
- - rw-r--r-- 1,792 filter-metadata-delimiter.t
- - rw-r--r-- 1,059 filter-metadata-duplicates-error.t
- - rw-r--r-- 343 filter-metadata-not-found-error.t
- - rw-r--r-- 1,578 filter-metadata-sequence-strains-mismatch.t
- - rw-r--r-- 412 filter-min-date.t
- - rw-r--r-- 470 filter-min-max-date-output.t
- - rw-r--r-- 2,435 filter-mismatched-sequences-error.t
- - rw-r--r-- 984 filter-mismatched-sequences.t
- - rw-r--r-- 301 filter-no-outputs-error.t
- - rw-r--r-- 966 filter-no-sequence-index-error.t
- - rw-r--r-- 512 filter-numerical-ids.t
- - rw-r--r-- 1,881 filter-output-contents.t
- - rw-r--r-- 395 filter-output-directory-not-found-error.t
- - rw-r--r-- 1,133 filter-output-metadata-header.t
- - rw-r--r-- 386 filter-output-strains-no-sequence-error.t
- - rw-r--r-- 702 filter-query-and-exclude-ambiguous-dates-by.t
- - rw-r--r-- 526 filter-query-and-include-where.t
- - rw-r--r-- 557 filter-query-and-include.t
- - rw-r--r-- 436 filter-query-backtick-quoting.t
- - rw-r--r-- 1,729 filter-query-boolean.t
- - rw-r--r-- 1,995 filter-query-columns.t
- - rw-r--r-- 2,149 filter-query-errors.t
- - rw-r--r-- 2,338 filter-query-example.t
- - rw-r--r-- 2,380 filter-query-numerical.t
- - rw-r--r-- 448 filter-query-str.t
- - rw-r--r-- 757 filter-sequence-length.t
- - rw-r--r-- 792 filter-sequences-vcf.t
- - rw-r--r-- 1,777 filter-subsample-missing-date-parts.t
- - rw-r--r-- 661 subsample-5-sequences-without-group-by-no-probabilistic-sampling.t
- - rw-r--r-- 636 subsample-8-sequences-no-probabilistic-sampling.t
- - rw-r--r-- 2,495 subsample-ambiguous-dates-error.t
- - rw-r--r-- 695 subsample-group-by-empty-value.t
- - rw-r--r-- 1,058 subsample-group-by-missing-error.t
- - rw-r--r-- 834 subsample-group-by-region-1-sequence-per-group-seed.t
- - rw-r--r-- 1,311 subsample-group-by-week.t
- - rw-r--r-- 1,987 subsample-group-by-with-custom-year-column.t
- - rw-r--r-- 705 subsample-group-by-without-force-included-strains.t
- - rw-r--r-- 564 subsample-max-sequences-no-probabilistic-sampling-error.t
- - rw-r--r-- 2,198 subsample-max-sequences-output.t
- - rw-r--r-- 2,335 subsample-max-sequences-with-probabilistic-sampling-warning.t
- - rw-r--r-- 393 subsample-no-sequences-quantity-error.t
- - rw-r--r-- 1,251 subsample-priority-file-error.t
- - rw-r--r-- 573 subsample-priority-file.t
- - rw-r--r-- 1,874 subsample-priority-values.t
- - rw-r--r-- 659 subsample-probabilistic-sampling-not-always-used.t
- - rw-r--r-- 838 subsample-probabilistic-sampling-output.t
- - rw-r--r-- 2,219 subsample-skip-ambiguous-dates.t