1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
|
#!/usr/bin/make -f
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
.PHONY: bam2hints homGeneMapping checkTargetSortedness joingenes
%:
dh $@ --parallel
bin:
mkdir -p bin
bam2hints: bin
$(MAKE) -C auxprogs/bam2hints
homGeneMapping: bin
$(MAKE) -C auxprogs/homGeneMapping/src
checkTargetSortedness: bin
$(MAKE) -C auxprogs/checkTargetSortedness
joingenes: bin
$(MAKE) -C auxprogs/joingenes
override_dh_auto_clean:
$(MAKE) -C auxprogs/bam2hints clean
$(MAKE) -C auxprogs/homGeneMapping/src clean
$(MAKE) -C auxprogs/joingenes clean
rm -rf bin
override_dh_auto_build: bam2hints homGeneMapping checkTargetSortedness joingenes bin
dh_auto_build
asciidoctor -a docdate='' -b manpage debian/mansrc/*adoc
override_dh_installchangelogs:
dh_installchangelogs -k HISTORY.TXT
override_dh_auto_install:
mkdir -p debian/augustus/usr/bin
install bin/* debian/augustus/usr/bin
install auxprogs/checkTargetSortedness/checkTargetSortedness \
debian/augustus/usr/bin
install auxprogs/homGeneMapping/src/homGeneMapping \
debian/augustus/usr/bin
install auxprogs/joingenes/joingenes \
debian/augustus/usr/bin
mkdir -p debian/augustus/usr/share/augustus
cp -r scripts debian/augustus/usr/share/augustus
chmod -R -x debian/augustus/usr/share/augustus/scripts/*
chmod +x debian/augustus/usr/share/augustus/scripts/checkUTR \
debian/augustus/usr/share/augustus/scripts/*.pl
mkdir -p debian/augustus-doc/usr/share/doc/augustus
cp README* debian/augustus-doc/usr/share/doc/augustus
cp docs/*.txt debian/augustus-doc/usr/share/doc/augustus
cp -r docs/tutorial \
debian/augustus-doc/usr/share/doc/augustus
mkdir -p debian/augustus-data/usr/share/augustus
cp -r config debian/augustus-data/usr/share/augustus
find debian/augustus-data/usr/share/augustus \
-type f -exec chmod -x {} \;
override_dh_compress:
dh_compress -Xtutorial
|
