package info
(click to toggle)
Folder: scripts
| .. (parent) | ||||
| - | rwxr-xr-x | 12,539 | README.autoAug | |
| - | rwxr-xr-x | 12,247 | SplicedAlignment.pm | |
| - | rwxr-xr-x | 3,022 | augustus2browser.pl | |
| - | rwxr-xr-x | 389 | augustus2gbrowse.pl | |
| - | rwxr-xr-x | 48,984 | autoAug.pl | |
| - | rwxr-xr-x | 20,477 | autoAugPred.pl | |
| - | rwxr-xr-x | 44,143 | autoAugTrain.pl | |
| - | rwxr-xr-x | 195 | autoRun.pathInfo | |
| - | rwxr-xr-x | 3,370 | bedgraph2wig.pl | |
| - | rwxr-xr-x | 4,442 | blat2gbrowse.pl | |
| - | rwxr-xr-x | 30,278 | blat2hints.pl | |
| - | rwxr-xr-x | 11,310 | block2prfl.pl | |
| - | rwxr-xr-x | 2,233 | cegma2gff.pl | |
| - | rwxr-xr-x | 3,843 | checkParamArchive.pl | |
| - | rwxr-xr-x | 1,151 | checkUTR | |
| - | rwxr-xr-x | 535 | cleanDOSfasta.pl | |
| - | rwxr-xr-x | 7,558 | clusterAndSplitGenes.pl | |
| - | rwxr-xr-x | 4,879 | createAugustusJoblist.pl | |
| - | rwxr-xr-x | 3,233 | del_from_prfl.pl | |
| - | rwxr-xr-x | 9,675 | evalCGP.pl | |
| - | rwxr-xr-x | 3,043 | exonerate2hints.pl | |
| - | rwxr-xr-x | 1,301 | exoniphyDb2hints.pl | |
| - | rwxr-xr-x | 507 | extractTranscriptEnds.pl | |
| - | rwxr-xr-x | 435 | filter-ppx.pl | |
| - | rwxr-xr-x | 850 | filterGenes.pl | |
| - | rwxr-xr-x | 2,188 | filterGenesIn_mRNAname.pl | |
| - | rwxr-xr-x | 1,716 | filterGenesOut_mRNAname.pl | |
| - | rwxr-xr-x | 1,122 | filterInFrameStopCodons.pl | |
| - | rwxr-xr-x | 2,923 | filterMaf.pl | |
| - | rwxr-xr-x | 17,619 | filterPSL.pl | |
| - | rwxr-xr-x | 4,465 | filterShrimp.pl | |
| - | rwxr-xr-x | 2,081 | filterSpliceHints.pl | |
| - | rwxr-xr-x | 3,098 | gbSmallDNA2gff.pl | |
| - | rwxr-xr-x | 8,078 | gbrowse.conf | |
| - | rwxr-xr-x | 3,769 | gbrowseold2gff3.pl | |
| - | rwxr-xr-x | 7,331 | getAnnoFasta.pl | |
| - | rwxr-xr-x | 16,996 | gff2gbSmallDNA.pl | |
| - | rwxr-xr-x | 1,758 | gff2ps_mycustom | |
| - | rwxr-xr-x | 4,074 | gffGetmRNA.pl | |
| - | rwxr-xr-x | 3,109 | gp2othergp.pl | |
| - | rwxr-xr-x | 9,915 | gtf2bed.pl | |
| - | rwxr-xr-x | 14,401 | gtf2gff.pl | |
| - | rwxr-xr-x | 12,923 | hal2maf_split.pl | |
| - | rwxr-xr-x | 8,166 | helpMod.pm | |
| - | rwxr-xr-x | 4,516 | intron2exex.pl | |
| - | rwxr-xr-x | 1,427 | joinPeptides.pl | |
| - | rwxr-xr-x | 8,749 | join_aug_pred.pl | |
| - | rwxr-xr-x | 1,229 | join_mult_hints.pl | |
| - | rwxr-xr-x | 3,469 | maf2conswig.pl | |
| - | rwxr-xr-x | 468 | makeMatchLists.pl | |
| - | rwxr-xr-x | 16,749 | makeUtrTrainingSet.pl | |
| - | rwxr-xr-x | 1,658 | maskNregions.pl | |
| - | rwxr-xr-x | 2,015 | moveParameters.pl | |
| - | rwxr-xr-x | 20,693 | msa2prfl.pl | |
| - | rwxr-xr-x | 7,113 | new_species.pl | |
| - | rwxr-xr-x | 7,092 | opt_init_and_term_probs.pl | |
| - | rwxr-xr-x | 65,114 | optimize_augustus.pl | |
| - | rwxr-xr-x | 3,606 | parseSim4Output.pl | |
| - | rwxr-xr-x | 17,132 | partition_gtf2gb.pl | |
| - | rwxr-xr-x | 2,108 | pasapolyA2hints.pl | |
| - | rwxr-xr-x | 3,369 | peptides2alternatives.pl | |
| - | rwxr-xr-x | 6,792 | peptides2hints.pl | |
| - | rwxr-xr-x | 2,761 | phastconsDB2hints.pl | |
| - | rwxr-xr-x | 2,330 | polyA2hints.pl | |
| - | rwxr-xr-x | 10,571 | prints2prfl.pl | |
| - | rwxr-xr-x | 8,032 | pslMap.pl | |
| - | rwxr-xr-x | 1,689 | randomSplit.pl | |
| - | rwxr-xr-x | 584 | ratewig.pl | |
| - | rwxr-xr-x | 1,946 | retroDB2hints.pl | |
| - | rwxr-xr-x | 1,403 | rmRedundantHints.pl | |
| - | rwxr-xr-x | 723 | runAllSim4.pl | |
| - | rwxr-xr-x | 4,992 | samMap.pl | |
| - | rwxr-xr-x | 1,159 | scipiogff2gff.pl | |
| - | rwxr-xr-x | 1,215 | simpleFastaHeaders.pl | |
| - | rwxr-xr-x | 2,598 | simplifyFastaHeaders.pl | |
| - | rwxr-xr-x | 1,792 | splitMfasta.pl | |
| - | rwxr-xr-x | 861 | split_wiggle.pl | |
| - | rwxr-xr-x | 2,158 | summarizeACGTcontent.pl | |
| - | rwxr-xr-x | 19,253 | transMap2hints.pl | |
| - | rwxr-xr-x | 1,964 | uniquePeptides.pl | |
| - | rwxr-xr-x | 2,395 | utrgff2gbrowse.pl | |
| - | rwxr-xr-x | 2,706 | webserver-results.body | |
| - | rwxr-xr-x | 2,134 | webserver-results.head | |
| - | rwxr-xr-x | 3,105 | webserver-results.tail | |
| - | rwxr-xr-x | 1,602 | weedMaf.pl | |
| - | rwxr-xr-x | 5,374 | wig2hints.pl | |
| - | rwxr-xr-x | 2,881 | wigchoose.pl | |
| - | rwxr-xr-x | 15,629 | writeResultsPage.pl | |
| - | rwxr-xr-x | 9,700 | yaml2gff.1.4.pl |
