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#!/usr/bin/make -f
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export TOOLDIR = /usr/include
export AUGUSTUS_CONFIG_PATH=$(CURDIR)/config
export LIBBAM_PKG_VERSION=$(shell apt-cache policy libbam-dev | grep Installed | cut -f2 -d: | cut -c2-)
.PHONY: bam2hints homGeneMapping checkTargetSortedness joingenes
%:
dh $@
bin:
mkdir -p bin
aln2wig: bin
$(MAKE) -C auxprogs/aln2wig
bam2hints: bin
$(MAKE) -C auxprogs/bam2hints
bam2wig: bin
$(MAKE) -C auxprogs/bam2wig
checkTargetSortedness: bin
$(MAKE) -C auxprogs/checkTargetSortedness
compileSpliceCands: bin
$(MAKE) -C auxprogs/compileSpliceCands
filterBam: bin
$(MAKE) -C auxprogs/filterBam
homGeneMapping: bin
$(MAKE) -C auxprogs/homGeneMapping/src
joingenes: bin
$(MAKE) -C auxprogs/joingenes
override_dh_auto_clean:
$(MAKE) -C auxprogs/bam2hints clean
$(MAKE) -C auxprogs/homGeneMapping clean
$(MAKE) -C auxprogs/joingenes clean
$(MAKE) -C auxprogs/aln2wig clean
$(MAKE) -C auxprogs/bam2wig clean
$(MAKE) -C auxprogs/checkTargetSortedness clean
$(MAKE) -C auxprogs/compileSpliceCands clean
$(MAKE) -C auxprogs/filterBam clean
rm -rf bin
override_dh_auto_build: aln2wig bam2hints bam2wig checkTargetSortedness compileSpliceCands filterBam homGeneMapping joingenes
dh_auto_build
asciidoctor -a docdate='' -b manpage debian/mansrc/*adoc
override_dh_installchangelogs:
dh_installchangelogs -k HISTORY.TXT
override_dh_auto_install:
mkdir -p debian/augustus/usr/bin
install bin/* debian/augustus/usr/bin
install auxprogs/checkTargetSortedness/checkTargetSortedness \
debian/augustus/usr/bin
install auxprogs/bam2wig/bam2wig \
debian/augustus/usr/bin
install auxprogs/compileSpliceCands/compileSpliceCands \
debian/augustus/usr/bin
install auxprogs/homGeneMapping/src/homGeneMapping \
debian/augustus/usr/bin
install auxprogs/joingenes/joingenes \
debian/augustus/usr/bin
mkdir -p debian/augustus/usr/share/augustus
cp -r scripts debian/augustus/usr/share/augustus
chmod -R -x debian/augustus/usr/share/augustus/scripts/*
rm -rf debian/augustus/usr/share/augustus/scripts/*.patch \
debian/augustus/usr/share/augustus/scripts/aln2wig
chmod +x debian/augustus/usr/share/augustus/scripts/checkUTR \
debian/augustus/usr/share/augustus/scripts/*.pl*
mkdir -p debian/augustus-doc/usr/share/doc/augustus
cp README* debian/augustus-doc/usr/share/doc/augustus
cp docs/*.txt debian/augustus-doc/usr/share/doc/augustus
cp -r docs/tutorial \
debian/augustus-doc/usr/share/doc/augustus
mkdir -p debian/augustus-data/usr/share/augustus
cp -r config debian/augustus-data/usr/share/augustus
find debian/augustus-data/usr/share/augustus \
-type f -exec chmod -x {} \;
override_dh_compress:
dh_compress -Xtutorial
override_dh_gencontrol:
dh_gencontrol -- \
-V'Built-Using:samtools=$(shell dpkg-query -f '$${source:Package} (= $${source:Version})' -W libbam-dev)'
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