File: checkTargetSortedness.1

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'\" t
.\"     Title: checktargetsortedness
.\"    Author: [see the "AUTHORS" section]
.\" Generator: Asciidoctor 1.5.5.dev
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "CHECKTARGETSORTEDNESS" "1" "" "\ \&" "\ \&"
.ie \n(.g .ds Aq \(aq
.el       .ds Aq '
.ss \n[.ss] 0
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.ad l
.de URL
\\$2 \(laURL: \\$1 \(ra\\$3
..
.if \n[.g] .mso www.tmac
.LINKSTYLE blue R < >
.SH "NAME"
checktargetsortedness \- check BAM file for sortedness
.SH "SYNOPSIS"
.sp
\fBcheckTargetSortedness\fP infile.bam
.SH "OPTIONS"
.sp
\(aqinfile.bam\(aq is the name of the BAM file to check for sortedness. The program will output a
short message describing the sortedness status of the file.
.SH "AUTHORS"
.sp
AUGUSTUS was written by M. Stanke, O. Keller, S. K├Ânig, L. Gerischer and L. Romoth.
.SH "ADDITIONAL DOCUMENTATION"
.sp
An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.