File: consensusFinder.1.adoc

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# consensusFinder(1)

## NAME

consensusFinder - consensus finder

## SYNOPSIS

*consensusFinder* input_fasta_file [options]

## OPTIONS

*-l*::
  pattern length

*-p*::
  p-value for finding the significant strings

*-d*::
  delta to find the relevant strings

*-s*::
  starting position

*-e*::
  ending position

*-m*::
  no. of mismatches to consider while finding neighbours

*-c*::
  string to consider for analysis

*-n*::
  specify the number of consensus patterns to store

*-t*::
  print the histogram

## AUTHORS

AUGUSTUS was written by M. Stanke, O. Keller, S. K├Ânig, L. Gerischer and L. Romoth.

## ADDITIONAL DOCUMENTATION

An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.