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augustus 3.3.2+dfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 486,188 kB
  • sloc: cpp: 51,969; perl: 20,926; ansic: 1,251; makefile: 935; python: 120; sh: 118

Folder: scripts

d .. (parent)
- - rw-r--r-- 12,539 README.autoAug
- - rwxr-xr-x 12,247 SplicedAlignment.pm
- - rwxr-xr-x 13,828 aa2nonred.pl
- - rwxr-xr-x 3,022 augustus2browser.pl
- - rwxr-xr-x 389 augustus2gbrowse.pl
- - rwxr-xr-x 49,009 autoAug.pl
- - rwxr-xr-x 20,477 autoAugPred.pl
- - rwxr-xr-x 44,543 autoAugTrain.pl
- - rw-r--r-- 195 autoRun.pathInfo
- - rwxr-xr-x 3,370 bedgraph2wig.pl
- - rwxr-xr-x 4,442 blat2gbrowse.pl
- - rwxr-xr-x 30,278 blat2hints.pl
- - rwxr-xr-x 11,310 block2prfl.pl
- - rwxr-xr-x 2,233 cegma2gff.pl
- - rwxr-xr-x 3,843 checkParamArchive.pl
- - rwxr-xr-x 1,151 checkUTR
- - rwxr-xr-x 535 cleanDOSfasta.pl
- - rwxr-xr-x 7,558 clusterAndSplitGenes.pl
- - rwxr-xr-x 2,363 computeFlankingRegion.pl
- - rwxr-xr-x 7,244 createAugustusJoblist.pl
- - rwxr-xr-x 3,233 del_from_prfl.pl
- - rwxr-xr-x 9,675 evalCGP.pl
- - rwxr-xr-x 13,247 eval_dualdecomp.pl
- - rwxr-xr-x 3,397 eval_multi_gtf.pl
- - rwxr-xr-x 3,043 exonerate2hints.pl
- - rwxr-xr-x 1,301 exoniphyDb2hints.pl
- - rwxr-xr-x 507 extractTranscriptEnds.pl
- - rwxr-xr-x 435 filter-ppx.pl
- - rwxr-xr-x 850 filterGenes.pl
- - rwxr-xr-x 1,071 filterGenesIn.pl
- - rwxr-xr-x 2,908 filterGenesIn_mRNAname.pl
- - rwxr-xr-x 1,716 filterGenesOut_mRNAname.pl
- - rwxr-xr-x 1,122 filterInFrameStopCodons.pl
- - rwxr-xr-x 2,923 filterMaf.pl
- - rwxr-xr-x 17,619 filterPSL.pl
- - rwxr-xr-x 4,465 filterShrimp.pl
- - rwxr-xr-x 2,081 filterSpliceHints.pl
- - rwxr-xr-x 1,649 findGffNamesInFasta.pl
- - rwxr-xr-x 3,098 gbSmallDNA2gff.pl
- - rwxr-xr-x 8,078 gbrowse.conf
- - rwxr-xr-x 3,769 gbrowseold2gff3.pl
- - rwxr-xr-x 7,642 getAnnoFasta.pl
- - rwxr-xr-x 7,409 getAnnoFastaFromJoingenes.py
- - rwxr-xr-x 2,038 getLinesMatching.pl
- - rwxr-xr-x 17,943 gff2gbSmallDNA.pl
- - rwxr-xr-x 1,758 gff2ps_mycustom
- - rwxr-xr-x 4,074 gffGetmRNA.pl
- - rwxr-xr-x 3,109 gp2othergp.pl
- - rwxr-xr-x 7,019 gtf2aa.pl
- - rwxr-xr-x 9,915 gtf2bed.pl
- - rwxr-xr-x 14,779 gtf2gff.pl
- - rw-r--r-- 2,833 gth2gtf.pl
- - rwxr-xr-x 12,923 hal2maf_split.pl
- - rw-r--r-- 8,166 helpMod.pm
- - rwxr-xr-x 4,521 intron2exex.pl
- - rwxr-xr-x 1,427 joinPeptides.pl
- - rwxr-xr-x 9,060 join_aug_pred.pl
- - rwxr-xr-x 2,665 join_mult_hints.pl
- - rwxr-xr-x 3,469 maf2conswig.pl
- - rwxr-xr-x 468 makeMatchLists.pl
- - rwxr-xr-x 16,749 makeUtrTrainingSet.pl
- - rwxr-xr-x 1,658 maskNregions.pl
- - rwxr-xr-x 2,015 moveParameters.pl
- - rwxr-xr-x 20,693 msa2prfl.pl
- - rwxr-xr-x 7,720 new_species.pl
- - rwxr-xr-x 7,092 opt_init_and_term_probs.pl
- - rwxr-xr-x 85,063 optimize_augustus.pl
- - rwxr-xr-x 3,606 parseSim4Output.pl
- - rwxr-xr-x 17,132 partition_gtf2gb.pl
- - rwxr-xr-x 2,108 pasapolyA2hints.pl
- - rwxr-xr-x 3,369 peptides2alternatives.pl
- - rwxr-xr-x 6,792 peptides2hints.pl
- - rwxr-xr-x 2,761 phastconsDB2hints.pl
- - rwxr-xr-x 2,330 polyA2hints.pl
- - rwxr-xr-x 10,571 prints2prfl.pl
- - rwxr-xr-x 8,032 pslMap.pl
- - rwxr-xr-x 1,971 randomSplit.pl
- - rwxr-xr-x 584 ratewig.pl
- - rwxr-xr-x 1,946 retroDB2hints.pl
- - rwxr-xr-x 1,403 rmRedundantHints.pl
- - rwxr-xr-x 723 runAllSim4.pl
- - rwxr-xr-x 4,992 samMap.pl
- - rwxr-xr-x 1,159 scipiogff2gff.pl
- - rwxr-xr-x 2,221 setStopCodonFreqs.pl
- - rwxr-xr-x 1,215 simpleFastaHeaders.pl
- - rwxr-xr-x 2,598 simplifyFastaHeaders.pl
- - rwxr-xr-x 2,099 splitMfasta.pl
- - rwxr-xr-x 861 split_wiggle.pl
- - rwxr-xr-x 2,158 summarizeACGTcontent.pl
- - rwxr-xr-x 19,253 transMap2hints.pl
- - rwxr-xr-x 1,964 uniquePeptides.pl
- - rwxr-xr-x 2,395 utrgff2gbrowse.pl
- - rw-r--r-- 2,706 webserver-results.body
- - rw-r--r-- 2,134 webserver-results.head
- - rw-r--r-- 3,105 webserver-results.tail
- - rwxr-xr-x 1,602 weedMaf.pl
- - rwxr-xr-x 5,374 wig2hints.pl
- - rwxr-xr-x 2,881 wigchoose.pl
- - rwxr-xr-x 15,629 writeResultsPage.pl
- - rwxr-xr-x 9,700 yaml2gff.1.4.pl