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#
# Makefile for Augustus
#
include common.mk
all:
mkdir -p bin
cd src && ${MAKE}
cd auxprogs && ${MAKE}
clean:
cd src && ${MAKE} clean
cd auxprogs && ${MAKE} clean
cd tests/examples && ./testcases.py --clean
tests/auxprogs/bam2wig/test_bam2wig.py --clean
INSTALLDIR = debian/augustus
install:
install -d $(INSTALLDIR)
cp -a config bin scripts $(INSTALLDIR)
ln -sf $(INSTALLDIR)/bin/augustus /usr/local/bin/augustus
ln -sf $(INSTALLDIR)/bin/etraining /usr/local/bin/etraining
ln -sf $(INSTALLDIR)/bin/prepareAlign /usr/local/bin/prepareAlign
ln -sf $(INSTALLDIR)/bin/fastBlockSearch /usr/local/bin/fastBlockSearch
if [ -f $(INSTALLDIR)/bin/load2db ] ; then ln -sf $(INSTALLDIR)/bin/load2db /usr/local/bin/load2db ; fi
if [ -f $(INSTALLDIR)/bin/getSeq ] ; then ln -sf $(INSTALLDIR)/bin/getSeq /usr/local/bin/getSeq ; fi
# for internal purposes:
release:
find . -name "*~" | xargs rm -f
rm .travis.yml
rm -rf .git
rm -rf .github
rm -f src/makedepend.pl
cd docs/tutorial2015/results; ls | grep -v do.sh | grep -v README | xargs rm; cd -
rm -r auxprogs/utrrnaseq/input/human-chr19
rm -r docs/tutorial-cgp/results/cactusout
make clean all
rm config/species/generic/*.pbl
cd src/parser; rm Makefile; cd -
cd ..; tar -czf augustus-$(AUGVERSION).tar.gz augustus-$(AUGVERSION)
test:
cd tests/examples && ./testcases.py --html
tests/auxprogs/bam2wig/test_bam2wig.py --html
unit_test:
cd src && ${MAKE} unittest
cd src/unittests && ./unittests
# remove -static from src/Makefile for MAC users
# remove -g -ggdb from CXXFLAGS
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