File: alignability.html

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<H2>Description</H2>
<P>
This track shows the number of genomes aligned to each position of the reference. The values range from 0 to the total number of input genomes and imputed ancestral genomes.
</P>

<H2>Methods</H2>
<P>
Alignability was generated using the <em>halAlignability</em> script of the <a href="https://github.com/glennhickey/hal">HAL tools package</a>.
</P>

<H2>References</H2>
<P>
Hickey <i>et al.</i>.
<a href="http://bioinformatics.oxfordjournals.org/content/29/10/1341.short">HAL: a hierarchical format for storing and analyzing multiple genome alignments.</a>.
<em>Bioinformatics</em>. 2013 May;29(10):1341-1342.
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