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/*
* fasta.hh
*
* License: Artistic License, see file LICENSE.TXT or
* https://opensource.org/licenses/artistic-license-1.0
*/
#ifndef _FASTA_HH
#define _FASTA_HH
#include <iostream>
#include <fstream>
#ifdef ZIPINPUT
#include <boost/iostreams/filtering_stream.hpp>
using boost::iostreams::filtering_istream;
void readOneFastaSeq(filtering_istream &ifstrm, char* &sequence, char* &name, int &length);
#endif
void readOneFastaSeq(std::stringstream &ifstrm, char* &sequence, char* &name, int &length);
void readOneFastaSeq(std::ifstream &ifstrm, char* &sequence, char* &name, int &length);
void readFastaHeader(std::ifstream &ifstrm, char* &name);
bool isFasta(std::ifstream &ifstrm);
#endif // _FASTA_HH
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