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#!/bin/bash
apt update
# Install required packages
apt install -y build-essential wget git autoconf
# Install dependencies for AUGUSTUS
apt install -y libsqlite3-dev libmysql++-dev
# Install dependencies for AUGUSTUS comparative gene prediction mode (CGP)
apt install -y libgsl-dev libsuitesparse-dev liblpsolve55-dev
# Install dependencies for the optional support of gzip compressed input files
apt install -y zlib1g-dev
# Install dependencies for bam2hints and filterBam
apt install -y libbamtools-dev
# Install additional dependencies for htslib and samtools
apt install -y libbz2-dev liblzma-dev libncurses5-dev
# Install additional dependencies for bam2wig
apt install -y libssl-dev libcurl3-dev
# Install additional dependencies for homgenemapping and utrrnaseq
apt install -y libboost-all-dev
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