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#!/usr/bin/make -f
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export AUGUSTUS_CONFIG_PATH=$(CURDIR)/config
.PHONY: bam2hints homGeneMapping joingenes
%:
dh $@
bin:
mkdir -p bin
aln2wig: bin
$(MAKE) -C auxprogs/aln2wig
bam2hints: bin
$(MAKE) -C auxprogs/bam2hints
bam2wig: bin
$(MAKE) -C auxprogs/bam2wig
compileSpliceCands: bin
$(MAKE) -C auxprogs/compileSpliceCands
filterBam: bin
$(MAKE) -C auxprogs/filterBam
homGeneMapping: bin
$(MAKE) -C auxprogs/homGeneMapping/src
joingenes: bin
$(MAKE) -C auxprogs/joingenes
override_dh_auto_clean:
$(MAKE) -C auxprogs/bam2hints clean
$(MAKE) -C auxprogs/homGeneMapping clean
$(MAKE) -C auxprogs/joingenes clean
$(MAKE) -C auxprogs/aln2wig clean
$(MAKE) -C auxprogs/bam2wig clean
$(MAKE) -C auxprogs/compileSpliceCands clean
$(MAKE) -C auxprogs/filterBam clean
rm -rf bin
rm -f debian/*substvars
rm -f debian/mansrc/*.1
find . -name "__pycache__" | xargs -r rm -r
find src -name "*.o" | xargs -r rm
find auxprogs -name "*.o" | xargs -r rm
rm -f auxprogs/utrrnaseq/Debug/utrrnaseq src/augustus src/etraining src/fastBlockSearch src/getSeq src/load2db src/load2sqlitedb src/pp_simScore src/prepareAlign
override_dh_auto_build: aln2wig bam2hints bam2wig compileSpliceCands filterBam homGeneMapping joingenes
dh_auto_build
asciidoctor -a docdate='' -b manpage --destination-dir=debian/mansrc/ mansrc/*adoc
override_dh_installchangelogs:
dh_installchangelogs -k docs/HISTORY.TXT
override_dh_auto_install:
mkdir -p debian/augustus/usr/bin
install bin/* debian/augustus/usr/bin
install auxprogs/bam2wig/bam2wig \
debian/augustus/usr/bin
install auxprogs/compileSpliceCands/compileSpliceCands \
debian/augustus/usr/bin
install auxprogs/homGeneMapping/src/homGeneMapping \
debian/augustus/usr/bin
install auxprogs/joingenes/joingenes \
debian/augustus/usr/bin
mkdir -p debian/augustus/usr/share/augustus
cp -r scripts debian/augustus/usr/share/augustus
chmod -R -x debian/augustus/usr/share/augustus/scripts/*
rm -rf debian/augustus/usr/share/augustus/scripts/*.patch \
debian/augustus/usr/share/augustus/scripts/executeTestCGP.py \
debian/augustus/usr/share/augustus/scripts/*.txt
chmod +x debian/augustus/usr/share/augustus/scripts/checkUTR \
debian/augustus/usr/share/augustus/scripts/*.pl*
mkdir -p debian/augustus-doc/usr/share/doc/augustus
cp README* debian/augustus-doc/usr/share/doc/augustus
cp docs/*.txt debian/augustus-doc/usr/share/doc/augustus
cp docs/RUNNING* debian/augustus-doc/usr/share/doc/augustus
cp docs/README* debian/augustus-doc/usr/share/doc/augustus
cp docs/EXONCAND-MSAS-CGP.md \
debian/augustus-doc/usr/share/doc/augustus
cp -r docs/tutorial \
debian/augustus-doc/usr/share/doc/augustus
cp -r docs/tutorial-cgp \
debian/augustus-doc/usr/share/doc/augustus
mkdir -p debian/augustus-data/usr/share/augustus
cp -r config debian/augustus-data/usr/share/augustus
find debian/augustus-data/usr/share/augustus \
-type f -exec chmod -x {} \;
override_dh_compress:
dh_compress -Xtutorial
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