File: Histogram.cpp

package info (click to toggle)
ausaxs 1.1.8-1
  • links: PTS, VCS
  • area: main
  • in suites: sid
  • size: 72,592 kB
  • sloc: cpp: 49,853; ansic: 6,901; python: 730; makefile: 18
file content (193 lines) | stat: -rw-r--r-- 5,274 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
// SPDX-License-Identifier: LGPL-3.0-or-later
// Author: Kristian Lytje

#include <hist/Histogram.h>
#include <dataset/SimpleDataset.h>

#include <algorithm>
#include <sstream>
#include <cassert>

using namespace ausaxs;
using namespace ausaxs::hist;

Histogram::Histogram(const Vector<double>& p) noexcept : p(p) {generate_axis();}
Histogram::Histogram(const Vector<double>& p, const Axis& axis) : p(p), axis(axis) {}
Histogram::Histogram(std::vector<double>&& p_tot, const Axis& axis) : p(std::move(p_tot)), axis(axis) {}
Histogram::Histogram(const Axis& axis) noexcept : p(axis.bins), axis(axis) {}

Histogram& Histogram::operator+=(const Histogram& rhs) {p += rhs.p; return *this;}
Histogram hist::operator+(const Histogram& lhs, const Histogram& rhs) {
    Histogram result(lhs);
    result += rhs;
    return result;
}

Histogram& Histogram::operator-=(const Histogram& rhs) {p -= rhs.p; return *this;}
Histogram hist::operator-(const Histogram& lhs, const Histogram& rhs) {
    Histogram result(lhs);
    result -= rhs;
    return result;
}

Histogram& Histogram::operator*=(double rhs) {p *= rhs; return *this;}
Histogram hist::operator*(const Histogram& lhs, double rhs) {
    Histogram result(lhs);
    result *= rhs;
    return result;
}

double& Histogram::operator[](int i) {
    return p[i];
}

double Histogram::operator[](int i) const {
    return p[i];
}

void Histogram::resize(unsigned int bins) {
    p.resize(bins);
    axis.resize(bins);
}

void Histogram::shorten_axis(unsigned int min_size) {
    if (p.size() < min_size) {return;}
    unsigned int max_bin = min_size;
    for (unsigned int i = p.size()-1; i > min_size; --i) {
        if (p[i] != 0) {
            max_bin = i+1; // +1 since we usually use this for looping (i.e. i < max_bin)
            break;
        }
    }

    p.resize(max_bin);
    if (!axis.empty()) {
        axis = Axis(axis.min, axis.min + max_bin*axis.width(), max_bin);
    }
}

const Axis& Histogram::get_axis() const {
    return axis;
}

const std::vector<double>& Histogram::get_counts() const {
    return p.data;
}

double& Histogram::get_count(unsigned int i) {
    assert(i < p.size() && "Index out of bounds");
    return p[i];
}

const double& Histogram::get_count(unsigned int i) const {
    assert(i < p.size() && "Index out of bounds");
    return p[i];
}

double& Histogram::index(unsigned int i) {
    return get_count(i);
}

const double& Histogram::index(unsigned int i) const {
    return get_count(i);
}

void Histogram::generate_axis() {
    axis = Axis(0, p.size(), p.size());
}

void Histogram::set_axis(const Axis& axis) noexcept {
    this->axis = axis;
}

void Histogram::normalize(double sum) {
    double total = std::accumulate(p.begin(), p.end(), 0.0);
    assert(total != 0 && "Cannot normalize a histogram with a sum of 0");
    std::transform(p.begin(), p.end(), p.begin(), [sum, total] (double x) {return x/total*sum;});
}

void Histogram::normalize_max(double max) {
    double max_val = *std::max_element(p.begin(), p.end());
    assert(max_val != 0 && "Cannot normalize a histogram with a max of 0");
    std::transform(p.begin(), p.end(), p.begin(), [max_val, max] (double x) {return x/max_val*max;});
}

void Histogram::merge(unsigned int n) {
    if (n == 0) {return;}

    std::vector<double> new_p;
    new_p.reserve(p.size()/(n-1));

    unsigned int i = 0;
    for (; i < p.size()-n; i += n) {
        new_p.push_back(std::accumulate(p.begin()+i, p.begin()+i+n, 0.0));
    }
    if (i < p.size()) {
        new_p.push_back(std::accumulate(p.begin()+i, p.end(), 0.0));
    }
    p = new_p;
    axis = Axis(axis.min, axis.max, p.size());
}

void Histogram::add_count(unsigned int i, double count) {
    assert(i < p.size() && "Index out of bounds");
    p[i] += count;
}

void Histogram::set_count(unsigned int i, double count) {
    assert(i < p.size() && "Index out of bounds");
    p[i] = count;
}

void Histogram::set_count(const std::vector<double>& counts) {
    p = counts;
}

void Histogram::bin(double value) {
    p[std::min(axis.get_bin(value), p.size()-1)]++;
}

void Histogram::bin(const std::vector<double>& values) {
    std::for_each(values.begin(), values.end(), [this] (double v) {bin(v);});
}

Limit Histogram::span_y() const noexcept {
    if (p.size() == 0) {return Limit(0, 0);}
    auto[min, max] = std::minmax_element(p.begin(), p.end());
    return Limit(*min, *max);
}

Limit Histogram::span_y_positive() const noexcept {
    if (size() == 0) {
        return Limit(0, 0);
    }

    double min = 0;
    double max = 0;
    for (unsigned int i = 0; i < p.size(); ++i) {
        if (0 < p[i]) {
            min = std::min(p[i], min);
        }
        max = std::max(p[i], max);
    }
    return Limit(min, max);
}

std::string Histogram::to_string() const noexcept {
    std::stringstream ss;
    auto ax = axis.as_vector();
    for (unsigned int i = 0; i < size(); i++) {
        ss << ax[i] << " " << p[i] << std::endl;
    }
    return ss.str();
}

unsigned int Histogram::size() const noexcept {return p.size();}

SimpleDataset Histogram::as_dataset() const {
    return SimpleDataset(axis.as_vector(), std::vector<double>(p.begin(), p.end()));
}

bool Histogram::operator==(const Histogram& rhs) const {
    return p == rhs.p && axis == rhs.axis;
}