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[AUTO_command_aliases]
ls =commandLs
cd =commandCd
shell =commandShell
cat =commandCat
wait =commandWait
copyDemo =commandCopyDemo
gui =commandCreateGUI
branchPoint =commandQueryBranchPoint
eigenvalue =commandQueryEigenvalue
floquet =commandQueryFloquet
help =commandInteractiveHelp
hopf =commandQueryHopf
iterations =commandQueryIterations
limitpoint =commandQueryLimitpoint
note =commandQueryNote
secondaryPeriod =commandQuerySecondaryPeriod
stepsize =commandQueryStepsize
changeConstant =commandRunnerConfigFort2
printConstant =commandRunnerPrintFort2
append =commandAppend
diagramAndSolutionGet =commandParseDiagramAndSolutionFile
clean =commandClean
constantsGet =commandParseConstantsFile
copy =commandCopyDataFiles
delete =commandDeleteDataFiles
deleteFort =commandDeleteFortFiles
diagramGet =commandParseDiagramFile
double =commandDouble
demo =commandCopyAndLoadDemo
load =commandRunnerLoadName
move =commandMoveFiles
plot =commandPlotter
plot3 =commandPlotter3D
run =commandRun
save =commandCopyFortFiles
solutionGet =commandParseSolutionFile
triple =commandTriple
userData =commandUserData
br =commandQueryBranchPoint
eg =commandQueryEigenvalue
fl =commandQueryFloquet
hp =commandQueryHopf
it =commandQueryIterations
lm =commandQueryLimitpoint
nt =commandQueryNote
sc =commandQuerySecondaryPeriod
st =commandQueryStepsize
ch =commandRunnerConfigFort2
pr =commandRunnerPrintFort2
ap =commandAppend
bt =commandParseDiagramAndSolutionFile
cl =commandClean
cn =commandParseConstantsFile
cp =commandCopyDataFiles
dl =commandDeleteDataFiles
dg =commandParseDiagramFile
db =commandDouble
dm =commandCopyAndLoadDemo
ld =commandRunnerLoadName
mv =commandMoveFiles
pl =commandPlotter
#FIXME: This doesn't match the rule we use for all other commands
p3 =commandPlotter3D
rn =commandRun
sv =commandCopyFortFiles
sl =commandParseSolutionFile
tr =commandTriple
us =commandUserData
man =commandInteractiveHelp
bp =commandQueryBranchPoint
ev =commandQueryEigenvalue
hb =commandQueryHopf
lp =commandQueryHopf
cc =commandRunnerConfigFort2
pc =commandRunnerPrintFort2
p2 =commandPlotter
r =commandRun
sp =commandQuerySecondaryPeriod
ss =commandQueryStepsize
df =commandDeleteFortFiles
[AUTO_plotter]
#bifurcation_symbol = "square"
#limit_point_symbol = None
#hopf_symbol = "fillsquare"
#period_doubling_symbol = "circle"
#torus_symbol = "fillcircle"
#user_point_symbol = None
#error_symbol = "crosssquare"
type = "solution"
solution_x = [0]
solution_y = [1]
solution_column_defaults=[[0,3,6,9],[1,4,7,10],[2,5,8,11],['t','t','t','t']]
[AUTO_plotter3D]
mark_t = 0.0
mark_t_radius = 0.05
auto_scale = 0
solution_x = [0]
solution_y = [1]
solution_z = [2]
solution_color = [3]
bifurcation_x=[0]
bifurcation_y=[2]
bifurcation_z=[3]
type = "bifurcation"
solution_column_defaults=[[0,3,6,9],[1,4,7,10],[2,5,8,11],['t','t','t','t']]
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