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#!/usr/bin/env python3
# -*- mode: python -*-
# -*- coding: utf-8 -*-
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Read/Write Avro File Object Containers."""
import io
import logging
import os
import zlib
from avro import schema
from avro import io as avro_io
try:
import snappy
has_snappy = True
except ImportError:
has_snappy = False
logger = logging.getLogger(__name__)
# ------------------------------------------------------------------------------
# Constants
# Version of the container file:
VERSION = 1
# Magic code that starts a data container file:
MAGIC = b'Obj' + bytes([VERSION])
# Size of the magic code, in number of bytes:
MAGIC_SIZE = len(MAGIC)
# Size of the synchronization marker, in number of bytes:
SYNC_SIZE = 16
# Interval between synchronization markers, in number of bytes:
# TODO: make configurable
SYNC_INTERVAL = 1000 * SYNC_SIZE
# Schema of the container header:
META_SCHEMA = schema.Parse("""
{
"type": "record", "name": "org.apache.avro.file.Header",
"fields": [{
"name": "magic",
"type": {"type": "fixed", "name": "magic", "size": %(magic_size)d}
}, {
"name": "meta",
"type": {"type": "map", "values": "bytes"}
}, {
"name": "sync",
"type": {"type": "fixed", "name": "sync", "size": %(sync_size)d}
}]
}
""" % {
'magic_size': MAGIC_SIZE,
'sync_size': SYNC_SIZE,
})
# Codecs supported by container files:
VALID_CODECS = frozenset(['null', 'deflate'])
if has_snappy:
VALID_CODECS = frozenset.union(VALID_CODECS, ['snappy'])
# Not used yet
VALID_ENCODINGS = frozenset(['binary'])
# Metadata key associated to the codec:
CODEC_KEY = "avro.codec"
# Metadata key associated to the schema:
SCHEMA_KEY = "avro.schema"
# ------------------------------------------------------------------------------
# Exceptions
class DataFileException(schema.AvroException):
"""Problem reading or writing file object containers."""
def __init__(self, msg):
super(DataFileException, self).__init__(msg)
# ------------------------------------------------------------------------------
class DataFileWriter(object):
"""Writes Avro data files."""
@staticmethod
def GenerateSyncMarker():
"""Generates a random synchronization marker."""
return os.urandom(SYNC_SIZE)
# TODO: make 'encoder' a metadata property
def __init__(
self,
writer,
datum_writer,
writer_schema=None,
codec='null',
):
"""Constructs a new DataFileWriter instance.
If the schema is not present, presume we're appending.
Args:
writer: File-like object to write into.
datum_writer:
writer_schema: Schema
codec:
"""
self._writer = writer
self._encoder = avro_io.BinaryEncoder(writer)
self._datum_writer = datum_writer
self._buffer_writer = io.BytesIO()
self._buffer_encoder = avro_io.BinaryEncoder(self._buffer_writer)
self._block_count = 0
self._meta = {}
# Ensure we have a writer that accepts bytes:
self._writer.write(b'')
# Whether the header has already been written:
self._header_written = False
if writer_schema is not None:
if codec not in VALID_CODECS:
raise DataFileException('Unknown codec: %r' % codec)
self._sync_marker = DataFileWriter.GenerateSyncMarker()
self.SetMeta('avro.codec', codec)
self.SetMeta('avro.schema', str(writer_schema).encode('utf-8'))
self.datum_writer.writer_schema = writer_schema
else:
# open writer for reading to collect metadata
dfr = DataFileReader(writer, avro_io.DatumReader())
# TODO: collect arbitrary metadata
# collect metadata
self._sync_marker = dfr.sync_marker
self.SetMeta('avro.codec', dfr.GetMeta('avro.codec'))
# get schema used to write existing file
schema_from_file = dfr.GetMeta('avro.schema').decode('utf-8')
self.SetMeta('avro.schema', schema_from_file)
self.datum_writer.writer_schema = schema.Parse(schema_from_file)
# seek to the end of the file and prepare for writing
writer.seek(0, 2)
self._header_written = True
# read-only properties
@property
def writer(self):
return self._writer
@property
def encoder(self):
return self._encoder
@property
def datum_writer(self):
return self._datum_writer
@property
def buffer_encoder(self):
return self._buffer_encoder
@property
def sync_marker(self):
return self._sync_marker
@property
def meta(self):
return self._meta
def __enter__(self):
return self
def __exit__(self, type, value, traceback):
# Perform a close if there's no exception
if type is None:
self.close()
@property
def block_count(self):
return self._block_count
def GetMeta(self, key):
"""Reports the metadata associated to the given key.
Args:
key: Key of the metadata to report the value of.
Returns:
The metadata value, as bytes, or None if the key does not exist.
"""
return self._meta.get(key)
def SetMeta(self, key, value):
"""Sets the metadata value for the given key.
Note: metadata is persisted and retrieved as bytes.
Args:
key: Key of the metadata to set.
value: Value of the metadata, as bytes or str.
Strings are automatically converted to bytes.
"""
if isinstance(value, str):
value = value.encode('utf-8')
assert isinstance(value, bytes), (
'Invalid metadata value for key %r: %r' % (key, value))
self._meta[key] = value
def _WriteHeader(self):
header = {
'magic': MAGIC,
'meta': self.meta,
'sync': self.sync_marker,
}
logger.debug(
'Writing Avro data file header:\n%s\nAvro header schema:\n%s',
header, META_SCHEMA)
self.datum_writer.write_data(META_SCHEMA, header, self.encoder)
self._header_written = True
# TODO: make a schema for blocks and use datum_writer
def _WriteBlock(self):
if not self._header_written:
self._WriteHeader()
if self.block_count <= 0:
logger.info('Current block is empty, nothing to write.')
return
# write number of items in block
self.encoder.write_long(self.block_count)
# write block contents
uncompressed_data = self._buffer_writer.getvalue()
codec = self.GetMeta(CODEC_KEY).decode('utf-8')
if codec == 'null':
compressed_data = uncompressed_data
compressed_data_length = len(compressed_data)
elif codec == 'deflate':
# The first two characters and last character are zlib
# wrappers around deflate data.
compressed_data = zlib.compress(uncompressed_data)[2:-1]
compressed_data_length = len(compressed_data)
elif codec == 'snappy':
compressed_data = snappy.compress(uncompressed_data)
compressed_data_length = len(compressed_data) + 4 # crc32
else:
fail_msg = '"%s" codec is not supported.' % codec
raise DataFileException(fail_msg)
# Write length of block
self.encoder.write_long(compressed_data_length)
# Write block
self.writer.write(compressed_data)
# Write CRC32 checksum for Snappy
if self.GetMeta(CODEC_KEY) == 'snappy':
self.encoder.write_crc32(uncompressed_data)
# write sync marker
self.writer.write(self.sync_marker)
logger.debug(
'Writing block with count=%d nbytes=%d sync=%r',
self.block_count, compressed_data_length, self.sync_marker)
# reset buffer
self._buffer_writer.seek(0)
self._buffer_writer.truncate()
self._block_count = 0
def append(self, datum):
"""Append a datum to the file."""
self.datum_writer.write(datum, self.buffer_encoder)
self._block_count += 1
# if the data to write is larger than the sync interval, write the block
if self._buffer_writer.tell() >= SYNC_INTERVAL:
self._WriteBlock()
def sync(self):
"""
Return the current position as a value that may be passed to
DataFileReader.seek(long). Forces the end of the current block,
emitting a synchronization marker.
"""
self._WriteBlock()
return self.writer.tell()
def flush(self):
"""Flush the current state of the file, including metadata."""
self._WriteBlock()
self.writer.flush()
def close(self):
"""Close the file."""
self.flush()
self.writer.close()
# ------------------------------------------------------------------------------
class DataFileReader(object):
"""Read files written by DataFileWriter."""
# TODO: allow user to specify expected schema?
# TODO: allow user to specify the encoder
def __init__(self, reader, datum_reader):
"""Initializes a new data file reader.
Args:
reader: Open file to read from.
datum_reader: Avro datum reader.
"""
self._reader = reader
self._raw_decoder = avro_io.BinaryDecoder(reader)
self._datum_decoder = None # Maybe reset at every block.
self._datum_reader = datum_reader
# read the header: magic, meta, sync
self._read_header()
# ensure codec is valid
avro_codec_raw = self.GetMeta('avro.codec')
if avro_codec_raw is None:
self.codec = "null"
else:
self.codec = avro_codec_raw.decode('utf-8')
if self.codec not in VALID_CODECS:
raise DataFileException('Unknown codec: %s.' % self.codec)
self._file_length = self._GetInputFileLength()
# get ready to read
self._block_count = 0
self.datum_reader.writer_schema = (
schema.Parse(self.GetMeta(SCHEMA_KEY).decode('utf-8')))
def __enter__(self):
return self
def __exit__(self, type, value, traceback):
# Perform a close if there's no exception
if type is None:
self.close()
def __iter__(self):
return self
def __next__(self):
"""Implements the iterator interface."""
return next(self)
# read-only properties
@property
def reader(self):
return self._reader
@property
def raw_decoder(self):
return self._raw_decoder
@property
def datum_decoder(self):
return self._datum_decoder
@property
def datum_reader(self):
return self._datum_reader
@property
def sync_marker(self):
return self._sync_marker
@property
def meta(self):
return self._meta
@property
def file_length(self):
"""Length of the input file, in bytes."""
return self._file_length
# read/write properties
@property
def block_count(self):
return self._block_count
def GetMeta(self, key):
"""Reports the value of a given metadata key.
Args:
key: Metadata key (string) to report the value of.
Returns:
Value associated to the metadata key, as bytes.
"""
return self._meta.get(key)
def SetMeta(self, key, value):
"""Sets a metadata.
Args:
key: Metadata key (string) to set.
value: Metadata value to set, as bytes.
"""
if isinstance(value, str):
value = value.encode('utf-8')
self._meta[key] = value
def _GetInputFileLength(self):
"""Reports the length of the input file, in bytes.
Leaves the current position unmodified.
Returns:
The length of the input file, in bytes.
"""
current_pos = self.reader.tell()
self.reader.seek(0, 2)
file_length = self.reader.tell()
self.reader.seek(current_pos)
return file_length
def is_EOF(self):
return self.reader.tell() == self.file_length
def _read_header(self):
# seek to the beginning of the file to get magic block
self.reader.seek(0, 0)
# read header into a dict
header = self.datum_reader.read_data(
META_SCHEMA, META_SCHEMA, self.raw_decoder)
# check magic number
if header.get('magic') != MAGIC:
fail_msg = "Not an Avro data file: %s doesn't match %s."\
% (header.get('magic'), MAGIC)
raise schema.AvroException(fail_msg)
# set metadata
self._meta = header['meta']
# set sync marker
self._sync_marker = header['sync']
def _read_block_header(self):
self._block_count = self.raw_decoder.read_long()
if self.codec == "null":
# Skip a long; we don't need to use the length.
self.raw_decoder.skip_long()
self._datum_decoder = self._raw_decoder
elif self.codec == 'deflate':
# Compressed data is stored as (length, data), which
# corresponds to how the "bytes" type is encoded.
data = self.raw_decoder.read_bytes()
# -15 is the log of the window size; negative indicates
# "raw" (no zlib headers) decompression. See zlib.h.
uncompressed = zlib.decompress(data, -15)
self._datum_decoder = avro_io.BinaryDecoder(io.BytesIO(uncompressed))
elif self.codec == 'snappy':
# Compressed data includes a 4-byte CRC32 checksum
length = self.raw_decoder.read_long()
data = self.raw_decoder.read(length - 4)
uncompressed = snappy.decompress(data)
self._datum_decoder = avro_io.BinaryDecoder(io.BytesIO(uncompressed))
self.raw_decoder.check_crc32(uncompressed);
else:
raise DataFileException("Unknown codec: %r" % self.codec)
def _skip_sync(self):
"""
Read the length of the sync marker; if it matches the sync marker,
return True. Otherwise, seek back to where we started and return False.
"""
proposed_sync_marker = self.reader.read(SYNC_SIZE)
if proposed_sync_marker != self.sync_marker:
self.reader.seek(-SYNC_SIZE, 1)
return False
else:
return True
# TODO: handle block of length zero
# TODO: clean this up with recursion
def __next__(self):
"""Return the next datum in the file."""
if self.block_count == 0:
if self.is_EOF():
raise StopIteration
elif self._skip_sync():
if self.is_EOF(): raise StopIteration
self._read_block_header()
else:
self._read_block_header()
datum = self.datum_reader.read(self.datum_decoder)
self._block_count -= 1
return datum
def close(self):
"""Close this reader."""
self.reader.close()
if __name__ == '__main__':
raise Exception('Not a standalone module')
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