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.. axe documentation master file, created by
   sphinx-quickstart on Fri Jul 25 09:16:47 2014.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to axe's documentation!
===============================

Axe is a read de-multiplexer, useful in situations where sequence reads contain
the indexes that uniquely distinguish samples. Axe uses a rapid and accurate
algorithm based on hamming mismatch tries to competitively match the prefix of
a sequencing read against a set of indexes. Axe supports combinatorial
indexing schemes.

Contents:

.. toctree::
   :maxdepth: 1

   tutorial
   usage
   algorithm




Indices and tables
==================

* :ref:`genindex`