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# -*- coding: utf-8 -*-
# coding=utf-8
# --------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License. See License.txt in the project root for
# license information.
# --------------------------------------------------------------------------
"""
The main file-system class and functionality.
Provides an pythonic interface to the Azure Data-lake Store, including
file-system commands with typical names and options, and a File object
which is compatible with the built-in File.
"""
# standard imports
import io
import logging
import sys
import uuid
import json
# local imports
from .exceptions import DatalakeBadOffsetException, DatalakeIncompleteTransferException
from .exceptions import FileNotFoundError, PermissionError
from .lib import DatalakeRESTInterface
from .utils import ensure_writable, read_block
from .enums import ExpiryOptionType
from .retry import ExponentialRetryPolicy, NoRetryPolicy
from .multiprocessor import multi_processor_change_acl
import pathlib
logger = logging.getLogger(__name__)
valid_expire_types = [x.value for x in ExpiryOptionType]
class AzureDLFileSystem(object):
"""
Access Azure DataLake Store as if it were a file-system
Parameters
----------
store_name: str ("")
Store name to connect to. If not supplied, we use environment variable azure_data_lake_store_name
token_credential: credentials object
When setting up a new connection, this contains the authorization
credentials. Use Azure Identity to get this or define an implementation of azure.core.credentials.TokenCredential
scopes: str(None)
which is a list of scopes to use for the token.
url_suffix: str (None)
Domain to send REST requests to. The end-point URL is constructed
using this and the store_name. If None, use default.
api_version: str (2018-09-01)
The API version to target with requests. Changing this value will change the behavior of the requests, and can cause unexpected behavior or breaking changes. Changes to this value should be undergone with caution.
per_call_timeout_seconds: float(60)
This is the timeout for each requests library call.
kwargs: optional key/values
Other arguments forwarded to the DatalakeRESTInterface constructor.
"""
_singleton = [None]
def __init__(self, token_credential=None, **kwargs):
self.token_credential = token_credential
self.kwargs = kwargs
self.connect()
self.dirs = {}
self._emptyDirs = []
AzureDLFileSystem._singleton[0] = self
@classmethod
def current(cls):
""" Return the most recently created AzureDLFileSystem
"""
if not cls._singleton[0]:
return cls()
else:
return cls._singleton[0]
def connect(self):
"""
Establish connection object.
"""
self.azure = DatalakeRESTInterface(token_credential=self.token_credential, **self.kwargs)
self.token_credential = self.azure.token_credential
def __setstate__(self, state):
self.__dict__.update(state)
self.connect()
def open(self, path, mode='rb', blocksize=2 ** 25, delimiter=None):
""" Open a file for reading or writing
Parameters
----------
path: string
Path of file on ADL
mode: string
One of 'rb', 'ab' or 'wb'
blocksize: int
Size of data-node blocks if reading
delimiter: byte(s) or None
For writing delimiter-ended blocks
"""
if 'b' not in mode:
raise NotImplementedError("Text mode not supported, use mode='%s'"
" and manage bytes" % (mode[0] + 'b'))
return AzureDLFile(self, AzureDLPath(path), mode, blocksize=blocksize,
delimiter=delimiter)
def _ls_batched(self, path, batch_size=4000):
"""Batched ListStatus calls. Internal Method"""
if batch_size <= 1:
raise ValueError("Batch size must be strictly greater than 1")
parms = {'listSize': batch_size}
ret = []
continuation_token = "NonEmptyStringSentinel"
while continuation_token != "":
ls_call_result = self.azure.call('LISTSTATUS', path, **parms)
data = ls_call_result['FileStatuses']['FileStatus']
ret.extend(data)
continuation_token = ls_call_result['FileStatuses']['continuationToken']
parms['listAfter'] = continuation_token # continuationToken to be used as ListAfter
return ret
def _ls(self, path, invalidate_cache=True, batch_size=4000):
""" List files at given path """
path = AzureDLPath(path).trim()
key = path.as_posix()
if invalidate_cache:
self.invalidate_cache(key)
if key not in self.dirs:
self.dirs[key] = self._ls_batched(key, batch_size=batch_size)
for f in self.dirs[key]:
f['name'] = (path / f['pathSuffix']).as_posix()
return self.dirs[key]
def ls(self, path="", detail=False, invalidate_cache=True):
"""
List all elements under directory specified with path
Parameters
----------
path: str or AzureDLPath
Path to query
detail: bool
Detailed info or not.
invalidate_cache: bool
Whether to invalidate cache or not
Returns
-------
List of elements under directory specified with path
"""
path = AzureDLPath(path)
files = self._ls(path, invalidate_cache)
if not files:
# in this case we just invalidated the cache (if it was true), so no need to do it again
inf = self.info(path, invalidate_cache=False)
if inf['type'] == 'DIRECTORY':
# always return an empty array in this case, because there are no entries underneath the folder
return []
raise FileNotFoundError(path)
if detail:
return files
else:
return [f['name'] for f in files]
def info(self, path, invalidate_cache=True, expected_error_code=None):
"""
File information for path
Parameters
----------
path: str or AzureDLPath
Path to query
invalidate_cache: bool
Whether to invalidate cache or not
expected_error_code: int
Optionally indicates a specific, expected error code, if any.
Returns
-------
File information
"""
path = AzureDLPath(path).trim()
path_as_posix = path.as_posix()
root = path.parent
root_as_posix = root.as_posix()
# in the case of getting info about the root itself or if the cache won't be hit
# simply return the result of a GETFILESTATUS from the service
if invalidate_cache or path_as_posix in {'/', '.'}:
to_return = self.azure.call('GETFILESTATUS', path_as_posix, expected_error_code=expected_error_code)[
'FileStatus']
to_return['name'] = path_as_posix
# add the key/value pair back to the cache so long as it isn't the root
if path_as_posix not in {'/', '.'}:
if root_as_posix not in self.dirs:
self.dirs[root_as_posix] = [to_return]
else:
found = False
for f in self.dirs[root_as_posix]:
if f['name'] == path_as_posix:
found = True
break
if not found:
self.dirs[root_as_posix].append(to_return)
return to_return
for f in self._ls(root, invalidate_cache):
if f['name'] == path_as_posix:
return f
raise FileNotFoundError(path)
def _walk(self, path, invalidate_cache=True, include_dirs=False):
"""
Walk a path recursively and returns list of files and dirs(if parameter set)
Parameters
----------
path: str or AzureDLPath
Path to query
invalidate_cache: bool
Whether to invalidate cache
include_dirs: bool
Whether to include dirs in return value
Returns
-------
List of files and (optionally) dirs
"""
ret = list(self._ls(path, invalidate_cache))
self._emptyDirs = []
current_subdirs = [f for f in ret if f['type'] != 'FILE']
while current_subdirs:
dirs_below_current_level = []
for apath in current_subdirs:
try:
sub_elements = self._ls(apath['name'], invalidate_cache)
except FileNotFoundError:
# Folder may have been deleted while walk is going on. Infrequent so we can take the linear hit
ret.remove(apath)
continue
if not sub_elements:
self._emptyDirs.append(apath)
else:
ret.extend(sub_elements)
dirs_below_current_level.extend([f for f in sub_elements if f['type'] != 'FILE'])
current_subdirs = dirs_below_current_level
if include_dirs:
return ret
else:
return [f for f in ret if f['type'] == 'FILE']
def _empty_dirs_to_add(self):
""" Returns directories found empty during walk. Only for internal use"""
return self._emptyDirs
def walk(self, path='', details=False, invalidate_cache=True):
"""
Get all files below given path
Parameters
----------
path: str or AzureDLPath
Path to query
details: bool
Whether to include file details
invalidate_cache: bool
Whether to invalidate cache
Returns
-------
List of files
"""
return [f if details else f['name'] for f in self._walk(path, invalidate_cache)]
def glob(self, path, details=False, invalidate_cache=True):
"""
Find files (not directories) by glob-matching.
Parameters
----------
path: str or AzureDLPath
Path to query
details: bool
Whether to include file details
invalidate_cache: bool
Whether to invalidate cache
Returns
-------
List of files
"""
path = AzureDLPath(path).trim()
path_as_posix = path.as_posix()
prefix = path.globless_prefix
allfiles = self.walk(prefix, details, invalidate_cache)
if prefix == path:
return allfiles
return [f for f in allfiles if AzureDLPath(f['name'] if details else f).match(path_as_posix)]
def du(self, path, total=False, deep=False, invalidate_cache=True):
"""
Bytes in keys at path
Parameters
----------
path: str or AzureDLPath
Path to query
total: bool
Return the sum on list
deep: bool
Recursively enumerate or just use files under current dir
invalidate_cache: bool
Whether to invalidate cache
Returns
-------
List of dict of name:size pairs or total size.
"""
if deep:
files = self._walk(path, invalidate_cache)
else:
files = self.ls(path, detail=True, invalidate_cache=invalidate_cache)
if total:
return sum(f.get('length', 0) for f in files)
else:
return {p['name']: p['length'] for p in files}
def df(self, path):
""" Resource summary of path
Parameters
----------
path: str
Path to query
"""
path = AzureDLPath(path).trim()
current_path_info = self.info(path, invalidate_cache=False)
if current_path_info['type'] == 'FILE':
return {'directoryCount': 0, 'fileCount': 1, 'length': current_path_info['length'], 'quota': -1,
'spaceConsumed': current_path_info['length'], 'spaceQuota': -1}
else:
all_files_and_dirs = self._walk(path, include_dirs=True)
dir_count = 1 # 1 as walk doesn't return current directory
length = file_count = 0
for item in all_files_and_dirs:
length += item['length']
if item['type'] == 'FILE':
file_count += 1
else:
dir_count += 1
return {'directoryCount': dir_count, 'fileCount': file_count, 'length': length, 'quota': -1,
'spaceConsumed': length, 'spaceQuota': -1}
def chmod(self, path, mod):
""" Change access mode of path
Note this is not recursive.
Parameters
----------
path: str
Location to change
mod: str
Octal representation of access, e.g., "0777" for public read/write.
See [docs](http://hadoop.apache.org/docs/r2.4.1/hadoop-project-dist/hadoop-hdfs/WebHDFS.html#Permission)
"""
path = AzureDLPath(path).trim()
self.azure.call('SETPERMISSION', path.as_posix(), permission=mod)
self.invalidate_cache(path.as_posix())
def set_expiry(self, path, expiry_option, expire_time=None):
"""
Set or remove the expiration time on the specified file.
This operation can only be executed against files.
Note: Folders are not supported.
Parameters
----------
path: str
File path to set or remove expiration time
expire_time: int
The time that the file will expire, corresponding to the expiry_option that was set
expiry_option: str
Indicates the type of expiration to use for the file:
1. NeverExpire: ExpireTime is ignored.
2. RelativeToNow: ExpireTime is an integer in milliseconds representing the expiration date relative to when file expiration is updated.
3. RelativeToCreationDate: ExpireTime is an integer in milliseconds representing the expiration date relative to file creation.
4. Absolute: ExpireTime is an integer in milliseconds, as a Unix timestamp relative to 1/1/1970 00:00:00.
"""
parms = {}
value_to_use = [x for x in valid_expire_types if x.lower() == expiry_option.lower()]
if len(value_to_use) != 1:
raise ValueError(
'expiry_option must be one of: {}. Value given: {}'.format(valid_expire_types, expiry_option))
if value_to_use[0] != ExpiryOptionType.never_expire.value and not expire_time:
raise ValueError(
'expire_time must be specified if the expiry_option is not NeverExpire. Value of expiry_option: {}'.format(
expiry_option))
path = AzureDLPath(path).trim()
parms['expiryOption'] = value_to_use[0]
if expire_time:
parms['expireTime'] = int(expire_time)
self.azure.call('SETEXPIRY', path.as_posix(), is_extended=True, **parms)
self.invalidate_cache(path.as_posix())
def _acl_call(self, action, path, acl_spec=None, invalidate_cache=False):
"""
Helper method for ACL calls to reduce code repetition
Parameters
----------
action: str
The ACL action being executed. For example SETACL
path: str
The path the action is being executed on (file or folder)
acl_spec: str
The optional ACL specification to set on the path in the format
'[default:]user|group|other:[entity id or UPN]:r|-w|-x|-,[default:]user|group|other:[entity id or UPN]:r|-w|-x|-,...'
Note that for remove acl entries the permission (rwx) portion is not required.
invalidate_cache: bool
optionally indicates that the cache of files should be invalidated after this operation
This should always be done for set and remove operations, since the state of the file or folder has changed.
"""
parms = {}
path = AzureDLPath(path).trim()
posix_path = path.as_posix()
if acl_spec:
parms['aclSpec'] = acl_spec
to_return = self.azure.call(action, posix_path, **parms)
if invalidate_cache:
self.invalidate_cache(posix_path)
return to_return
def set_acl(self, path, acl_spec, recursive=False, number_of_sub_process=None):
"""
Set the Access Control List (ACL) for a file or folder.
Note: this is by default not recursive, and applies only to the file or folder specified.
Parameters
----------
path: str
Location to set the ACL on.
acl_spec: str
The ACL specification to set on the path in the format
'[default:]user|group|other:[entity id or UPN]:r|-w|-x|-,[default:]user|group|other:[entity id or UPN]:r|-w|-x|-,...'
recursive: bool
Specifies whether to set ACLs recursively or not
"""
if recursive:
multi_processor_change_acl(adl=self, path=path, method_name="set_acl", acl_spec=acl_spec,
number_of_sub_process=number_of_sub_process)
else:
self._acl_call('SETACL', path, acl_spec, invalidate_cache=True)
def modify_acl_entries(self, path, acl_spec, recursive=False, number_of_sub_process=None):
"""
Modify existing Access Control List (ACL) entries on a file or folder.
If the entry does not exist it is added, otherwise it is updated based on the spec passed in.
No entries are removed by this process (unlike set_acl).
Note: this is by default not recursive, and applies only to the file or folder specified.
Parameters
----------
path: str
Location to set the ACL entries on.
acl_spec: str
The ACL specification to use in modifying the ACL at the path in the format
'[default:]user|group|other:[entity id or UPN]:r|-w|-x|-,[default:]user|group|other:[entity id or UPN]:r|-w|-x|-,...'
recursive: bool
Specifies whether to modify ACLs recursively or not
"""
if recursive:
multi_processor_change_acl(adl=self, path=path, method_name="mod_acl", acl_spec=acl_spec,
number_of_sub_process=number_of_sub_process)
else:
self._acl_call('MODIFYACLENTRIES', path, acl_spec, invalidate_cache=True)
def remove_acl_entries(self, path, acl_spec, recursive=False, number_of_sub_process=None):
"""
Remove existing, named, Access Control List (ACL) entries on a file or folder.
If the entry does not exist already it is ignored.
Default entries cannot be removed this way, please use remove_default_acl for that.
Unnamed entries cannot be removed in this way, please use remove_acl for that.
Note: this is by default not recursive, and applies only to the file or folder specified.
Parameters
----------
path: str
Location to remove the ACL entries.
acl_spec: str
The ACL specification to remove from the ACL at the path in the format (note that the permission portion is missing)
'[default:]user|group|other:[entity id or UPN],[default:]user|group|other:[entity id or UPN],...'
recursive: bool
Specifies whether to remove ACLs recursively or not
"""
if recursive:
multi_processor_change_acl(adl=self, path=path, method_name="rem_acl", acl_spec=acl_spec,
number_of_sub_process=number_of_sub_process)
else:
self._acl_call('REMOVEACLENTRIES', path, acl_spec, invalidate_cache=True)
def get_acl_status(self, path):
"""
Gets Access Control List (ACL) entries for the specified file or directory.
Parameters
----------
path: str
Location to get the ACL.
"""
return self._acl_call('MSGETACLSTATUS', path)['AclStatus']
def remove_acl(self, path):
"""
Remove the entire, non default, ACL from the file or folder, including unnamed entries.
Default entries cannot be removed this way, please use remove_default_acl for that.
Note: this is not recursive, and applies only to the file or folder specified.
Parameters
----------
path: str
Location to remove the ACL.
"""
self._acl_call('REMOVEACL', path, invalidate_cache=True)
def remove_default_acl(self, path):
"""
Remove the entire default ACL from the folder.
Default entries do not exist on files, if a file
is specified, this operation does nothing.
Note: this is not recursive, and applies only to the folder specified.
Parameters
----------
path: str
Location to set the ACL on.
"""
self._acl_call('REMOVEDEFAULTACL', path, invalidate_cache=True)
def chown(self, path, owner=None, group=None):
"""
Change owner and/or owning group
Note this is not recursive.
Parameters
----------
path: str
Location to change
owner: str
UUID of owning entity
group: str
UUID of group
"""
parms = {}
if owner is None and group is None:
raise ValueError('Must supply owner and/or group')
if owner:
parms['owner'] = owner
if group:
parms['group'] = group
path = AzureDLPath(path).trim()
self.azure.call('SETOWNER', path.as_posix(), **parms)
self.invalidate_cache(path.as_posix())
def exists(self, path, invalidate_cache=True):
"""
Does such a file/directory exist?
Parameters
----------
path: str or AzureDLPath
Path to query
invalidate_cache: bool
Whether to invalidate cache
Returns
-------
True or false depending on whether the path exists.
"""
try:
self.info(path, invalidate_cache, expected_error_code=404)
return True
except FileNotFoundError:
return False
def cat(self, path):
"""
Return contents of file
Parameters
----------
path: str or AzureDLPath
Path to query
Returns
-------
Contents of file
"""
with self.open(path, 'rb') as f:
return f.read()
def tail(self, path, size=1024):
"""
Return last bytes of file
Parameters
----------
path: str or AzureDLPath
Path to query
size: int
How many bytes to return
Returns
-------
Last(size) bytes of file
"""
length = self.info(path)['length']
if size > length:
return self.cat(path)
with self.open(path, 'rb') as f:
f.seek(length - size)
return f.read(size)
def head(self, path, size=1024):
"""
Return first bytes of file
Parameters
----------
path: str or AzureDLPath
Path to query
size: int
How many bytes to return
Returns
-------
First(size) bytes of file
"""
with self.open(path, 'rb', blocksize=size) as f:
return f.read(size)
def get(self, path, filename):
"""
Stream data from file at path to local filename
Parameters
----------
path: str or AzureDLPath
ADL Path to read
filename: str or Path
Local file path to write to
Returns
-------
None
"""
with self.open(path, 'rb') as f:
with open(filename, 'wb') as f2:
while True:
data = f.read(f.blocksize)
if len(data) == 0:
break
f2.write(data)
def put(self, filename, path, delimiter=None):
"""
Stream data from local filename to file at path
Parameters
----------
filename: str or Path
Local file path to read from
path: str or AzureDLPath
ADL Path to write to
delimiter:
Optional delimeter for delimiter-ended blocks
Returns
-------
None
"""
with open(filename, 'rb') as f:
with self.open(path, 'wb', delimiter=delimiter) as f2:
while True:
data = f.read(f2.blocksize)
if len(data) == 0:
break
f2.write(data)
def mkdir(self, path):
"""
Make new directory
Parameters
----------
path: str or AzureDLPath
Path to create directory
Returns
-------
None
"""
""" """
path = AzureDLPath(path).trim()
self.azure.call('MKDIRS', path.as_posix())
self.invalidate_cache(path)
def rmdir(self, path):
"""
Remove empty directory
Parameters
----------
path: str or AzureDLPath
Directory path to remove
Returns
-------
None
"""
if self.info(path)['type'] != "DIRECTORY":
raise ValueError('Can only rmdir on directories')
# should always invalidate the cache when checking to see if the directory is empty
if self.ls(path, invalidate_cache=True):
raise ValueError('Directory not empty: %s' % path)
self.rm(path, False)
def mv(self, path1, path2):
"""
Move file between locations on ADL
Parameters
----------
path1:
Source Path
path2:
Destination path
Returns
-------
None
"""
path1 = AzureDLPath(path1).trim()
path2 = AzureDLPath(path2).trim()
self.azure.call('RENAME', path1.as_posix(),
destination=path2.as_posix())
self.invalidate_cache(path1)
self.invalidate_cache(path2)
def concat(self, outfile, filelist, delete_source=False):
""" Concatenate a list of files into one new file
Parameters
----------
outfile: path
The file which will be concatenated to. If it already exists,
the extra pieces will be appended.
filelist: list of paths
Existing adl files to concatenate, in order
delete_source: bool (False)
If True, assume that the paths to concatenate exist alone in a
directory, and delete that whole directory when done.
Returns
-------
None
"""
outfile = AzureDLPath(outfile).trim()
delete = 'true' if delete_source else 'false'
sourceList = [AzureDLPath(f).as_posix() for f in filelist]
sources = {}
sources["sources"] = sourceList
self.azure.call('MSCONCAT', outfile.as_posix(),
data=bytearray(json.dumps(sources, separators=(',', ':')), encoding="utf-8"),
deleteSourceDirectory=delete,
headers={'Content-Type': "application/json"},
retry_policy=NoRetryPolicy())
self.invalidate_cache(outfile)
merge = concat
def cp(self, path1, path2):
""" Not implemented. Copy file between locations on ADL """
# TODO: any implementation for this without download?
raise NotImplementedError
def rm(self, path, recursive=False):
"""
Remove a file or directory
Parameters
----------
path: str or AzureDLPath
The location to remove.
recursive: bool (True)
Whether to remove also all entries below, i.e., which are returned
by `walk()`.
Returns
-------
None
"""
path = AzureDLPath(path).trim()
# Always invalidate the cache when attempting to check existence of something to delete
if not self.exists(path, invalidate_cache=True):
raise FileNotFoundError(path)
self.azure.call('DELETE', path.as_posix(), recursive=recursive)
self.invalidate_cache(path)
if recursive:
matches = [p for p in self.dirs if p.startswith(path.as_posix())]
[self.invalidate_cache(m) for m in matches]
def invalidate_cache(self, path=None):
"""
Remove entry from object file-cache
Parameters
----------
path: str or AzureDLPath
Remove the path from object file-cache
Returns
-------
None
"""
if path is None:
self.dirs.clear()
else:
path = AzureDLPath(path).trim()
self.dirs.pop(path.as_posix(), None)
parent = AzureDLPath(path.parent).trim()
self.dirs.pop(parent.as_posix(), None)
def touch(self, path):
"""
Create empty file
Parameters
----------
path: str or AzureDLPath
Path of file to create
Returns
-------
None
"""
with self.open(path, 'wb'):
pass
def read_block(self, fn, offset, length, delimiter=None):
""" Read a block of bytes from an ADL file
Starting at ``offset`` of the file, read ``length`` bytes. If
``delimiter`` is set then we ensure that the read starts and stops at
delimiter boundaries that follow the locations ``offset`` and ``offset
+ length``. If ``offset`` is zero then we start at zero. The
bytestring returned WILL include the end delimiter string.
If offset+length is beyond the eof, reads to eof.
Parameters
----------
fn: string
Path to filename on ADL
offset: int
Byte offset to start read
length: int
Number of bytes to read
delimiter: bytes (optional)
Ensure reading starts and stops at delimiter bytestring
Examples
--------
>>> adl.read_block('data/file.csv', 0, 13) # doctest: +SKIP
b'Alice, 100\\nBo'
>>> adl.read_block('data/file.csv', 0, 13, delimiter=b'\\n') # doctest: +SKIP
b'Alice, 100\\nBob, 200\\n'
Use ``length=None`` to read to the end of the file.
>>> adl.read_block('data/file.csv', 0, None, delimiter=b'\\n') # doctest: +SKIP
b'Alice, 100\\nBob, 200\\nCharlie, 300'
See Also
--------
distributed.utils.read_block
"""
with self.open(fn, 'rb') as f:
size = f.info()['length']
if offset >= size:
return b''
if length is None:
length = size
if offset + length > size:
length = size - offset
bytes = read_block(f, offset, length, delimiter)
return bytes
# ALIASES
listdir = ls
access = exists
rename = mv
stat = info
unlink = remove = rm
class AzureDLFile(object):
"""
Open ADL key as a file. Data is only loaded and cached on demand.
Parameters
----------
azure: azure connection
path: AzureDLPath
location of file
mode: str {'wb', 'rb', 'ab'}
blocksize: int
Size of the write or read-ahead buffer. For writing(and appending, will be
truncated to 4MB (2**22).
delimiter: bytes or None
If specified and in write mode, each flush will send data terminating
on this bytestring, potentially leaving some data in the buffer.
Examples
--------
>>> adl = AzureDLFileSystem() # doctest: +SKIP
>>> with adl.open('my-dir/my-file.txt', mode='rb') as f: # doctest: +SKIP
... f.read(10) # doctest: +SKIP
See Also
--------
AzureDLFileSystem.open: used to create AzureDLFile objects
"""
def __init__(self, azure, path, mode='rb', blocksize=2 ** 25,
delimiter=None):
self.mode = mode
if mode not in {'rb', 'wb', 'ab'}:
raise NotImplementedError("File mode must be {'rb', 'wb', 'ab'}, not %s" % mode)
self.path = path
self.azure = azure
self.cache = b""
self.loc = 0
self.delimiter = delimiter
self.start = 0
self.end = 0
self.closed = False
self.trim = True
self.buffer = io.BytesIO()
self.blocksize = blocksize
uniqueid = str(uuid.uuid4())
self.filesessionid = uniqueid
self.leaseid = uniqueid
# always invalidate the cache when checking for existence of a file
# that may be created or written to (for the first time).
try:
file_data = self.azure.info(path, invalidate_cache=True, expected_error_code=404)
exists = True
except FileNotFoundError:
exists = False
# cannot create a new file object out of a directory
if exists and file_data['type'] == 'DIRECTORY':
raise IOError(
'path: {} is a directory, not a file, and cannot be opened for reading or writing'.format(path))
if mode == 'ab' or mode == 'wb':
self.blocksize = min(2 ** 22, blocksize)
if mode == 'ab' and exists:
self.loc = file_data['length']
elif (mode == 'ab' and not exists) or (mode == 'wb'):
# Create the file
_put_data_with_retry(
rest=self.azure.azure,
op='CREATE',
path=self.path.as_posix(),
data=None,
overwrite='true',
write='true',
syncFlag='DATA',
leaseid=self.leaseid,
filesessionid=self.filesessionid)
logger.debug('Created file %s ' % self.path)
else: # mode == 'rb':
if not exists:
raise FileNotFoundError(path.as_posix())
self.size = file_data['length']
def info(self):
""" File information about this path """
return self.azure.info(self.path)
def tell(self):
""" Current file location """
return self.loc
def seek(self, loc, whence=0):
""" Set current file location
Parameters
----------
loc: int
byte location
whence: {0, 1, 2}
from start of file, current location or end of file, resp.
"""
if not self.mode == 'rb':
raise ValueError('Seek only available in read mode')
if whence == 0:
nloc = loc
elif whence == 1:
nloc = self.loc + loc
elif whence == 2:
nloc = self.size + loc
else:
raise ValueError(
"invalid whence (%s, should be 0, 1 or 2)" % whence)
if nloc < 0:
raise ValueError('Seek before start of file')
if nloc > self.size:
raise ValueError('ADLFS does not support seeking beyond file')
self.loc = nloc
return self.loc
def readline(self, length=-1):
"""
Read and return a line from the stream.
If length is specified, at most size bytes will be read.
"""
if length < 0:
length = self.size
line = b""
while True:
# if cache has last bytes of file and its read, return line and exit loop
if self.end >= self.size and self.loc >= self.end:
return line
self._read_blocksize()
found = self.cache[self.loc - self.start:].find(b'\n') + 1
if found:
partialLine = self.cache[
self.loc - self.start: min(self.loc - self.start + found, self.loc - self.start + length)]
else:
partialLine = self.cache[self.loc - self.start:]
self.loc += len(partialLine)
line += partialLine
if found:
return line
def __next__(self):
out = self.readline()
if not out:
raise StopIteration
return out
next = __next__
def __iter__(self):
return self
def readlines(self):
""" Return all lines in a file as a list """
return list(self)
def _fetch(self, start, end):
self.start = start
self.end = min(end, self.size)
response = _fetch_range_with_retry(
self.azure.azure, self.path.as_posix(), self.start, self.end, filesessionid=self.filesessionid)
self.cache = getattr(response, 'content', response)
def _read_blocksize(self, offset=-1):
"""
Reads next blocksize of data and updates the cache if read offset is not within cache otherwise nop
Parameters
----------
offset: int (-1)
offset from where to read; if <0, last read location or beginning of file.
Returns
-------
None
"""
if offset < 0:
offset = self.loc
if offset >= self.size:
self.start = self.size
self.end = self.size
self.cache = b""
return
if self.start <= offset < self.end:
logger.debug("Read offset {offset} is within cache {start}-{end}. "
"Not going to server.".format(offset=offset, start=self.start, end=self.end))
return
if offset > self.size:
raise ValueError('Read offset is outside the File')
self._fetch(offset, offset + self.blocksize)
def read(self, length=-1):
"""
Return data from cache, or fetch pieces as necessary
Parameters
----------
length: int (-1)
Number of bytes to read; if <0, all remaining bytes.
"""
if self.mode != 'rb':
raise ValueError('File not in read mode')
if length < 0:
length = self.size
if self.closed:
raise ValueError('I/O operation on closed file.')
flag = 0
out = b""
while length > 0:
self._read_blocksize()
data_read = self.cache[self.loc - self.start:
min(self.loc - self.start + length, self.end - self.start)]
if not data_read: # Check to catch possible server errors. Ideally shouldn't happen.
flag += 1
if flag >= 5:
exception_string = "Current Location:{loc}, " \
"File Size:{size}, Cache Start:{start}, " \
"Cache End:{end}".format(loc=self.loc, size=self.size,
start=self.start, end=self.end)
raise DatalakeIncompleteTransferException('Could not read data: {path}. '
'Repeated zero byte reads. Possible file corruption. File Details'
'{details}'.format(path=self.path, details=exception_string))
out += data_read
self.loc += len(data_read)
length -= len(data_read)
if self.loc >= self.size:
length = 0
return out
read1 = read
def readinto(self, b):
"""
Reads data into buffer b
Parameters
----------
b: bytearray
Buffer to which bytes are read into
Returns
-------
Returns number of bytes read.
"""
temp = self.read(len(b))
b[:len(temp)] = temp
return len(temp)
def write(self, data):
"""
Write data to buffer.
Buffer only sent to ADL on flush() or if buffer is bigger than
blocksize.
Parameters
----------
data: bytes
Set of bytes to be written.
"""
if self.mode not in {'wb', 'ab'}:
raise ValueError('File not in write mode')
if self.closed:
raise ValueError('I/O operation on closed file.')
# TODO Flush may be simplified
# Buffered writes so a very large buffer is not copied leading to very large memory consumption
bytes_written = 0
for i in range(0, len(data), self.blocksize):
out = self.buffer.write(ensure_writable(data[i:i + self.blocksize]))
self.loc += out
bytes_written += out
self.flush(syncFlag='DATA')
return bytes_written
def flush(self, syncFlag='METADATA', force=False):
"""
Write buffered data to ADL.
Without delimiter: Uploads the current buffer.
With delimiter: writes an amount of data less than or equal to the
block-size, which ends on the delimiter, until buffer is smaller than
the blocksize. If there is no delimiter in a block uploads whole block.
If force=True, flushes all data in the buffer, even if it doesn't end
with a delimiter; appropriate when closing the file.
"""
if not self.writable() or self.closed:
return
if not (syncFlag == 'METADATA' or syncFlag == 'DATA' or syncFlag == 'CLOSE'):
raise ValueError('syncFlag must be one of these: METADATA, DATA or CLOSE')
common_args_append = {
'rest': self.azure.azure,
'op': 'APPEND',
'path': self.path.as_posix(),
'append': 'true',
'leaseid': self.leaseid,
'filesessionid': self.filesessionid
}
self.buffer.seek(0) # Go to start of buffer
data = self.buffer.read()
while len(data) > self.blocksize:
data_to_write_limit = self.blocksize
if self.delimiter:
delimiter_index = data.rfind(self.delimiter, 0, self.blocksize)
if delimiter_index != -1: # delimiter found
data_to_write_limit = delimiter_index + len(self.delimiter)
offset = self.tell() - len(data)
_put_data_with_retry(syncFlag='DATA', data=data[:data_to_write_limit], offset=offset, **common_args_append)
logger.debug('Wrote %d bytes to %s' % (data_to_write_limit, self))
data = data[data_to_write_limit:]
if force:
offset = self.tell() - len(data)
_put_data_with_retry(syncFlag=syncFlag, data=data, offset=offset, **common_args_append)
logger.debug('Wrote %d bytes to %s' % (len(data), self))
data = b''
self.buffer = io.BytesIO(data)
self.buffer.seek(0, 2) # seek to end for other writes to buffer
def close(self):
""" Close file
If in write mode, causes flush of any unwritten data.
"""
logger.debug("closing stream")
if self.closed:
return
if self.writable():
self.flush(syncFlag='CLOSE', force=True)
self.azure.invalidate_cache(self.path.as_posix())
self.closed = True
def readable(self):
"""Return whether the AzureDLFile was opened for reading"""
return self.mode == 'rb'
def seekable(self):
"""Return whether the AzureDLFile is seekable (only in read mode)"""
return self.readable()
def writable(self):
"""Return whether the AzureDLFile was opened for writing"""
return self.mode in {'wb', 'ab'}
def __str__(self):
return "<ADL file: %s>" % (self.path.as_posix())
__repr__ = __str__
def __enter__(self):
return self
def __exit__(self, *args):
self.close()
def _fetch_range(rest, path, start, end, stream=False, retry_policy=ExponentialRetryPolicy(), **kwargs):
logger.debug('Fetch: %s, %s-%s', path, start, end)
# if the caller gives a bad start/end combination, OPEN will throw and
# this call will bubble it up
return rest.call(
'OPEN', path, offset=start, length=end - start, read='true', stream=stream, retry_policy=retry_policy, **kwargs)
def _fetch_range_with_retry(rest, path, start, end, stream=False, retries=10,
delay=0.01, backoff=3, **kwargs):
err = None
retry_policy = ExponentialRetryPolicy(max_retries=retries, exponential_retry_interval=delay,
exponential_factor=backoff)
try:
return _fetch_range(rest, path, start, end, stream=False, retry_policy=retry_policy, **kwargs)
except Exception as e:
err = e
exception = RuntimeError('Max number of ADL retries exceeded: exception ' + repr(err))
rest.log_response_and_raise(None, exception)
def _put_data(rest, op, path, data, retry_policy=ExponentialRetryPolicy(), **kwargs):
logger.debug('Put: %s %s, %s', op, path, kwargs)
return rest.call(op, path=path, data=data, retry_policy=retry_policy, **kwargs)
def _put_data_with_retry(rest, op, path, data, retries=10, delay=0.01, backoff=3,
**kwargs):
err = None
retry_policy = ExponentialRetryPolicy(max_retries=retries, exponential_retry_interval=delay,
exponential_factor=backoff)
try:
return _put_data(rest, op, path, data, retry_policy=retry_policy, **kwargs)
except (PermissionError, FileNotFoundError) as e:
rest.log_response_and_raise(None, e)
except DatalakeBadOffsetException as e:
try:
# There is a possibility that a call in previous retry succeeded in the backend
# but didn't generate a response. In that case, any other retry will fail as the
# data is already written. We can try a zero byte append at len(data) + offset
# and see if it succeeds. If it does, we assume that data is written and carry on.
current_offset = kwargs.pop('offset', None)
if current_offset is None:
raise e
return _put_data(rest, op, path, [], retry_policy=retry_policy, offset=current_offset + len(data), **kwargs)
except:
rest.log_response_and_raise(None, e)
except Exception as e:
err = e
logger.debug('Exception %s on ADL upload',
repr(err))
exception = RuntimeError('Max number of ADL retries exceeded: exception ' + repr(err))
rest.log_response_and_raise(None, exception)
class AzureDLPath(type(pathlib.PurePath())):
"""
Subclass of native object-oriented filesystem path.
This is used as a convenience class for reducing boilerplate and
eliminating differences between system-dependent paths.
We subclass the system's concrete pathlib class due to this issue:
http://stackoverflow.com/questions/29850801/subclass-pathlib-path-fails
Parameters
----------
path: AzureDLPath or string
location of file or directory
Examples
--------
>>> p1 = AzureDLPath('/Users/foo') # doctest: +SKIP
>>> p2 = AzureDLPath(p1.name) # doctest: +SKIP
"""
def __contains__(self, s):
""" Return whether string is contained in path. """
return s in self.as_posix()
def __getstate__(self):
return self.as_posix()
def __setstate__(self, state):
self.__init__(state)
@property
def globless_prefix(self):
""" Return shortest path prefix without glob quantifiers. """
parts = []
for part in self.parts:
if any(q in part for q in ['*', '?']):
break
parts.append(part)
return pathlib.PurePath(*parts)
def startswith(self, prefix, *args, **kwargs):
""" Return whether string starts with the prefix.
This is equivalent to `str.startswith`.
"""
return self.as_posix().startswith(prefix.as_posix(), *args, **kwargs)
def trim(self):
""" Return path without anchor (concatenation of drive and root). """
return self.relative_to(self.anchor)
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