1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
|
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Møller–Plesset perturbation theory (MP2) — BAGEL Manual</title>
<link rel="stylesheet" href="../_static/override.css" type="text/css" />
<link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
<script type="text/javascript" id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
<script type="text/javascript" src="../_static/jquery.js"></script>
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="N-electron valence state perturbation theory (NEVPT2)" href="nevpt2.html" />
<link rel="prev" title="Perturbation theory" href="pt2.html" />
</head><body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
<a href="nevpt2.html" title="N-electron valence state perturbation theory (NEVPT2)"
accesskey="N">next</a></li>
<li class="right" >
<a href="pt2.html" title="Perturbation theory"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="../index.html">BAGEL Manual</a> »</li>
<li class="nav-item nav-item-1"><a href="../user-manual.html" ><strong>BAGEL user manual</strong></a> »</li>
<li class="nav-item nav-item-2"><a href="pt2.html" accesskey="U">Perturbation theory</a> »</li>
</ul>
</div>
<div class="document">
<div class="documentwrapper">
<div class="bodywrapper">
<div class="body" role="main">
<div class="section" id="moller-plesset-perturbation-theory-mp2">
<span id="mp2"></span><h1>Møller–Plesset perturbation theory (MP2)<a class="headerlink" href="#moller-plesset-perturbation-theory-mp2" title="Permalink to this headline">¶</a></h1>
<div class="section" id="description">
<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
<p>Second-order Møller–Plesset perturbation theory (MP2) calculations are performed with density fitting using
the keyword <code class="docutils literal notranslate"><span class="pre">"title"</span> <span class="pre">:</span> <span class="pre">"mp2"</span></code>.</p>
</div>
<div class="section" id="keywords">
<h2>Keywords<a class="headerlink" href="#keywords" title="Permalink to this headline">¶</a></h2>
<div class="topic">
<p class="topic-title first"><code class="docutils literal notranslate"><span class="pre">frozen</span></code></p>
<div class="line-block">
<div class="line"><strong>Description</strong>: to have frozen orbitals or not</div>
<div class="line"><strong>Datatype</strong>: bool</div>
<div class="line"><strong>Default</strong>: true</div>
</div>
</div>
<div class="topic">
<p class="topic-title first"><code class="docutils literal notranslate"><span class="pre">ncore</span></code></p>
<div class="line-block">
<div class="line"><strong>Description</strong>: manually specify number of frozen orbitals, used when ‘frozen’ is turned on</div>
<div class="line"><strong>Datatype</strong>: int</div>
</div>
</div>
<div class="topic">
<p class="topic-title first"><code class="docutils literal notranslate"><span class="pre">aux_basis</span></code></p>
<div class="line-block">
<div class="line"><strong>Description</strong>: specify an auxiliary basis set for MP2</div>
<div class="line"><strong>Datatype</strong>: string</div>
<div class="line"><strong>Default</strong>: use the same density fitting basis as in <a class="reference internal" href="../molecule/molecule.html#molecule"><span class="std std-ref">Required keywords</span></a></div>
<div class="line"><strong>Recommendation</strong>: use MP2-fit auxiliary basis (auxiliary basis ends with ‘ri’)</div>
</div>
</div>
</div>
<div class="section" id="example">
<h2>Example<a class="headerlink" href="#example" title="Permalink to this headline">¶</a></h2>
<div class="highlight-javascript notranslate"><div class="highlight"><pre><span></span><span class="p">{</span> <span class="s2">"bagel"</span> <span class="o">:</span> <span class="p">[</span>
<span class="p">{</span>
<span class="s2">"title"</span> <span class="o">:</span> <span class="s2">"molecule"</span><span class="p">,</span>
<span class="s2">"basis"</span> <span class="o">:</span> <span class="s2">"cc-pvdz"</span><span class="p">,</span>
<span class="s2">"df_basis"</span> <span class="o">:</span> <span class="s2">"cc-pvdz-jkfit"</span><span class="p">,</span>
<span class="s2">"angstrom"</span> <span class="o">:</span> <span class="s2">"true"</span><span class="p">,</span>
<span class="s2">"geometry"</span> <span class="o">:</span> <span class="p">[</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"C"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="o">-</span><span class="mf">1.20433891360</span><span class="p">,</span> <span class="mf">0.54285096106</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.04748199659</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"C"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="o">-</span><span class="mf">1.20543291352</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.83826393986</span><span class="p">,</span> <span class="mf">0.12432899108</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"C"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="o">-</span><span class="mf">0.00000600000</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.52953889027</span><span class="p">,</span> <span class="mf">0.20833398505</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"C"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="mf">1.20544091352</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.83825393987</span><span class="p">,</span> <span class="mf">0.12432799108</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"C"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="mf">1.20433091360</span><span class="p">,</span> <span class="mf">0.54284396106</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.04748099659</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"C"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="mf">0.00000400000</span><span class="p">,</span> <span class="mf">1.23314191154</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.13372399041</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"H"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="o">-</span><span class="mf">2.13410484690</span><span class="p">,</span> <span class="mf">1.07591192282</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.12500499103</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"H"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="o">-</span><span class="mf">2.13651384673</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.37179190159</span><span class="p">,</span> <span class="mf">0.18742198655</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"H"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="mf">0.00000000000</span><span class="p">,</span> <span class="o">-</span><span class="mf">2.59646181374</span><span class="p">,</span> <span class="mf">0.33932597566</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"H"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="mf">2.13651384673</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.37179290159</span><span class="p">,</span> <span class="mf">0.18742198655</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"H"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="mf">2.13410684690</span><span class="p">,</span> <span class="mf">1.07591292282</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.12500599103</span><span class="p">]</span> <span class="p">},</span>
<span class="p">{</span> <span class="s2">"atom"</span> <span class="o">:</span> <span class="s2">"H"</span><span class="p">,</span> <span class="s2">"xyz"</span> <span class="o">:</span> <span class="p">[</span> <span class="o">-</span><span class="mf">0.00000000000</span><span class="p">,</span> <span class="mf">2.29608983528</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.28688797942</span><span class="p">]</span> <span class="p">}</span>
<span class="p">]</span>
<span class="p">},</span>
<span class="p">{</span>
<span class="s2">"title"</span> <span class="o">:</span> <span class="s2">"hf"</span>
<span class="p">},</span>
<span class="p">{</span>
<span class="s2">"title"</span> <span class="o">:</span> <span class="s2">"mp2"</span><span class="p">,</span>
<span class="s2">"aux_basis"</span> <span class="o">:</span> <span class="s2">"cc-pvdz-ri"</span><span class="p">,</span>
<span class="s2">"frozen"</span> <span class="o">:</span> <span class="kc">true</span>
<span class="p">}</span>
<span class="p">]}</span>
</pre></div>
</div>
<p>The SCF calculation should converge after 11 iterations with energy -230.72159477. The DF-MP2 output is as follows:</p>
<div class="highlight-javascript notranslate"><div class="highlight"><pre><span></span><span class="o">===</span> <span class="nx">DF</span><span class="o">-</span><span class="nx">MP2</span> <span class="nx">calculation</span> <span class="o">===</span>
<span class="o">*</span> <span class="nx">freezing</span> <span class="mi">6</span> <span class="nx">orbitals</span>
<span class="nb">Number</span> <span class="k">of</span> <span class="nx">auxiliary</span> <span class="nx">basis</span> <span class="nx">functions</span><span class="o">:</span> <span class="mi">420</span>
<span class="nx">Since</span> <span class="nx">a</span> <span class="nx">DF</span> <span class="nx">basis</span> <span class="nx">is</span> <span class="nx">specified</span><span class="p">,</span> <span class="nx">we</span> <span class="nx">compute</span> <span class="mi">2</span><span class="o">-</span> <span class="nx">and</span> <span class="mi">3</span><span class="o">-</span><span class="nx">index</span> <span class="nx">integrals</span><span class="o">:</span>
<span class="nx">o</span> <span class="nx">Being</span> <span class="nx">stored</span> <span class="nx">without</span> <span class="nx">compression</span><span class="p">.</span> <span class="nx">Storage</span> <span class="nx">requirement</span> <span class="nx">is</span> <span class="mf">0.044</span> <span class="nx">GB</span>
<span class="o">-</span> <span class="mi">3</span><span class="o">-</span><span class="nx">index</span> <span class="nx">ints</span> <span class="nx">prep</span> <span class="mf">0.00</span>
<span class="o">-</span> <span class="mi">3</span><span class="o">-</span><span class="nx">index</span> <span class="nx">ints</span> <span class="mf">0.06</span>
<span class="o">-</span> <span class="mi">2</span><span class="o">-</span><span class="nx">index</span> <span class="nx">ints</span> <span class="mf">0.00</span>
<span class="o">-</span> <span class="nx">computing</span> <span class="nx">inverse</span> <span class="mf">0.02</span>
<span class="nx">elapsed</span> <span class="nx">time</span><span class="o">:</span> <span class="mf">0.09</span> <span class="nx">sec</span><span class="p">.</span>
<span class="nb">Number</span> <span class="k">of</span> <span class="nx">basis</span> <span class="nx">functions</span><span class="o">:</span> <span class="mi">114</span>
<span class="nb">Number</span> <span class="k">of</span> <span class="nx">electrons</span> <span class="o">:</span> <span class="mi">42</span>
<span class="o">*</span> <span class="mi">3</span><span class="o">-</span><span class="nx">index</span> <span class="nx">integral</span> <span class="nx">transformation</span> <span class="nx">done</span>
<span class="o">*</span> <span class="nx">ncache</span> <span class="o">=</span> <span class="mi">20</span>
<span class="o">*</span> <span class="nx">assembly</span> <span class="nx">done</span>
<span class="nx">MP2</span> <span class="nx">correlation</span> <span class="nx">energy</span><span class="o">:</span> <span class="o">-</span><span class="mf">0.7813195576</span> <span class="mf">0.19</span>
<span class="nx">MP2</span> <span class="nx">total</span> <span class="nx">energy</span><span class="o">:</span> <span class="o">-</span><span class="mf">231.5029143295</span>
<span class="o">*</span> <span class="nx">METHOD</span><span class="o">:</span> <span class="nx">MP2</span> <span class="mf">0.34</span>
</pre></div>
</div>
</div>
<div class="section" id="references">
<h2>References<a class="headerlink" href="#references" title="Permalink to this headline">¶</a></h2>
<table border="1" class="docutils">
<colgroup>
<col width="40%" />
<col width="60%" />
</colgroup>
<thead valign="bottom">
<tr class="row-odd"><th class="head">Description of Reference</th>
<th class="head">Reference</th>
</tr>
</thead>
<tbody valign="top">
<tr class="row-even"><td>Original reference for MP2</td>
<td>C. Møller and M. S. Plesset, Phys. Rev. <strong>46</strong>, 618 (1934).</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</div>
</div>
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
<div class="sphinxsidebarwrapper">
<h3><a href="../index.html">Table Of Contents</a></h3>
<ul class="current">
<li class="toctree-l1 current"><a class="reference internal" href="../user-manual.html"><strong>BAGEL user manual</strong></a><ul class="current">
<li class="toctree-l2"><a class="reference internal" href="../quickstart/quickstart.html">First steps with BAGEL</a></li>
<li class="toctree-l2"><a class="reference internal" href="../molecule/molecule-toc.html">Molecule specification</a></li>
<li class="toctree-l2"><a class="reference internal" href="../scf/scf.html">Self-consistent field</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ci/ci_methods.html">Configuration interaction</a></li>
<li class="toctree-l2"><a class="reference internal" href="../multi/multi.html">Multiconfiguration self-consistent field</a></li>
<li class="toctree-l2 current"><a class="reference internal" href="pt2.html">Perturbation theory</a></li>
<li class="toctree-l2"><a class="reference internal" href="../smith/smith.html">SMITH3-generated code</a></li>
<li class="toctree-l2"><a class="reference internal" href="../grad/grad.html">Nuclear gradients and related functionalities</a></li>
<li class="toctree-l2"><a class="reference internal" href="../asd/asd.html">Active space decomposition method</a></li>
<li class="toctree-l2"><a class="reference internal" href="../miscellaneous/misc.html">Miscellaneous features</a></li>
<li class="toctree-l2"><a class="reference internal" href="../supp_info/supp_info.html">Supplementary information</a></li>
<li class="toctree-l2"><a class="reference internal" href="../author.html">Author contributions</a></li>
<li class="toctree-l2"><a class="reference internal" href="../funding.html">Funding and citation</a></li>
</ul>
</li>
</ul>
<h4>Previous topic</h4>
<p class="topless"><a href="pt2.html"
title="previous chapter">Perturbation theory</a></p>
<h4>Next topic</h4>
<p class="topless"><a href="nevpt2.html"
title="next chapter">N-electron valence state perturbation theory (NEVPT2)</a></p>
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
<div class="searchformwrapper">
<form class="search" action="../search.html" method="get">
<input type="text" name="q" />
<input type="submit" value="Go" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
</div>
<div class="clearer"></div>
</div>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
<a href="nevpt2.html" title="N-electron valence state perturbation theory (NEVPT2)"
>next</a></li>
<li class="right" >
<a href="pt2.html" title="Perturbation theory"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="../index.html">BAGEL Manual</a> »</li>
<li class="nav-item nav-item-1"><a href="../user-manual.html" ><strong>BAGEL user manual</strong></a> »</li>
<li class="nav-item nav-item-2"><a href="pt2.html" >Perturbation theory</a> »</li>
</ul>
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Shiozaki Group.
</div>
</body>
</html>
|