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Source: bali-phy
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Benjamin Redelings <benjamin.redelings@gmail.com>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
meson,
cmake,
libcairo2-dev,
libeigen3-dev,
nlohmann-json3-dev,
pandoc,
libboost-dev,
libboost-program-options-dev,
libboost-random-dev,
libboost-system-dev,
libboost-filesystem-dev,
libboost-chrono-dev,
libboost-json-dev,
libcereal-dev,
libfmt-dev,
librange-v3-dev
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/bali-phy
Vcs-Git: https://salsa.debian.org/med-team/bali-phy.git
Homepage: http://www.bali-phy.org
Rules-Requires-Root: no
Package: bali-phy
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${perl:Depends},
python3
Recommends: r-base,
gnuplot
Suggests: figtree,
seaview
Description: Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees
from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC
to estimate evolutionary trees, positive selection, and branch lengths
while averaging over alternative alignments. BAli-Phy can display
alignment ambiguity graphically in an alignment uncertainty (AU) plot.
.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically
estimates relative rates for each gene.
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