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#!/bin/sh
set -ex
pkg=bali-phy
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
export HOME="$AUTOPKGTEST_TMP"
bali-phy --version
bali-phy --help
bali-phy 5S-rRNA/5d.fasta --test --seed=0
bali-phy 5S-rRNA/5d.fasta --iter=50 --seed=0
bali-phy 5S-rRNA/5d.fasta --iter=200 -I rs07 --seed=0
bali-phy 5S-rRNA/5d.fasta --iter=100
bp-analyze 5d-1
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