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% path-graph(1)
% Benjamin Redelings
% Feb 2018
# NAME
**path-graph** - Compute a consensus alignment for the alignments given.
# SYNOPSIS
**path-graph** [OPTIONS] < alignments-file
# DESCRIPTION
Compute a consensus alignment for the alignments given.
# ALLOWED OPTIONS:
**-h**, **--help**
: produce help message
**--alphabet** _arg_
: Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets, Codons, or Codons+stop.
**--taxa** _arg_
: Colon-separate pair of taxon names
**--skip** _arg_ (=0)
: number of tree samples to skip
**--max-alignments** _arg_ (=1000)
: maximum number of alignments to analyze
# REPORTING BUGS:
BAli-Phy online help: <http://www.bali-phy.org/docs.php>.
Please send bug reports to <bali-phy-users@googlegroups.com>.
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