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# Generate necessary directories
FILE(MAKE_DIRECTORY @CTD_OUTFILE_DIR@)
FILE(MAKE_DIRECTORY @CWL_STUBS_DIR@)
FILE(MAKE_DIRECTORY @LOGFILE_DIR@)
# Install CTDConverter and its dependencies
INCLUDE(@PROJECT_BINARY_DIR@/install_ctdconverter.cmake)
# Generate CTDs for BALLTools
INCLUDE(@PROJECT_BINARY_DIR@/generate_ctds.cmake)
# Generate CWL stubs
MESSAGE(STATUS "Generating CWL task files")
FILE(GLOB CTD_FILES "@CTD_OUTFILE_DIR@/*.ctd")
EXECUTE_PROCESS(COMMAND "@MINICONDA_INSTALL_DIR@/bin/python" "convert.py"
cwl
--input ${CTD_FILES}
--output-destination @CWL_STUBS_DIR@
--validation-schema "@PROJECT_BINARY_DIR@/CTDSchema/CTD.xsd"
--blacklist help h write_par par env write_ini
OUTPUT_FILE "@LOGFILE_DIR@/cwl_gen_out.log"
ERROR_FILE "@LOGFILE_DIR@/cwl_gen_err.log"
WORKING_DIRECTORY "@PROJECT_BINARY_DIR@/CTDConverter"
)
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