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#include <BALL/CONCEPT/classTest.h>
#include <BALLTestConfig.h>
#include <BALL/FORMAT/PDBFile.h>
#include <BALL/KERNEL/atomContainer.h>
#include <BALL/KERNEL/chain.h>
#include <BALL/KERNEL/molecule.h>
#include <BALL/KERNEL/nucleicAcid.h>
#include <BALL/KERNEL/nucleotide.h>
#include <BALL/KERNEL/protein.h>
#include <BALL/KERNEL/residue.h>
#include <BALL/KERNEL/secondaryStructure.h>
#include <BALL/KERNEL/system.h>
using namespace BALL;
START_TEST(StdIteratorWrapper)
PDBFile f;
f.open(BALL_TEST_DATA_PATH(1BNA.pdb));
System s;
f >> s;
CHECK(AtomContainer)
// AtomIterator
{
AtomContainer* cont = &s;
AtomIterator old = cont->beginAtom();
for(AtomIterator it = cont->atoms().begin(); it != cont->atoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const AtomContainer* cont = &s;
AtomConstIterator old = cont->beginAtom();
for(AtomConstIterator it = cont->atoms().begin(); it != cont->atoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// AtomContainerIterator
{
AtomContainer* cont = &s;
AtomContainerIterator old = cont->beginAtomContainer();
for(AtomContainerIterator it = cont->atomContainers().begin(); it != cont->atomContainers().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const AtomContainer* cont = &s;
AtomContainerConstIterator old = cont->beginAtomContainer();
for(AtomContainerConstIterator it = cont->atomContainers().begin(); it != cont->atomContainers().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
RESULT
CHECK(Chain)
// PDBAtomIterator
{
Chain* cont = s.getProtein(0)->getChain(0);
PDBAtomIterator old = cont->beginPDBAtom();
for(PDBAtomIterator it = cont->pdbAtoms().begin(); it != cont->pdbAtoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Chain* cont = s.getProtein(0)->getChain(0);
PDBAtomConstIterator old = cont->beginPDBAtom();
for(PDBAtomConstIterator it = cont->pdbAtoms().begin(); it != cont->pdbAtoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// ResidueIterator
{
Chain* cont = s.getProtein(0)->getChain(0);
ResidueIterator old = cont->beginResidue();
for(ResidueIterator it = cont->residues().begin(); it != cont->residues().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Chain* cont = s.getProtein(0)->getChain(0);
ResidueConstIterator old = cont->beginResidue();
for(ResidueConstIterator it = cont->residues().begin(); it != cont->residues().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// SecondaryStructureIterator
{
Chain* cont = s.getProtein(0)->getChain(0);
SecondaryStructureIterator old = cont->beginSecondaryStructure();
for(SecondaryStructureIterator it = cont->secondaryStructures().begin(); it != cont->secondaryStructures().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Chain* cont = s.getProtein(0)->getChain(0);
SecondaryStructureConstIterator old = cont->beginSecondaryStructure();
for(SecondaryStructureConstIterator it = cont->secondaryStructures().begin(); it != cont->secondaryStructures().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
RESULT
CHECK(Molecule)
{
Molecule* cont = s.getProtein(0);
FragmentIterator old = cont->beginFragment();
for(FragmentIterator it = cont->fragments().begin(); it != cont->fragments().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Molecule* cont = s.getProtein(0);
FragmentConstIterator old = cont->beginFragment();
for(FragmentConstIterator it = cont->fragments().begin(); it != cont->fragments().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
RESULT
/*
CHECK(NucleicAcid)
Nucleotide, nucleotides)
RESULT
*/
CHECK(Protein)
{
Protein* cont = s.getProtein(0);
ChainIterator old = cont->beginChain();
for(ChainIterator it = cont->chains().begin(); it != cont->chains().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Protein* cont = s.getProtein(0);
ChainConstIterator old = cont->beginChain();
for(ChainConstIterator it = cont->chains().begin(); it != cont->chains().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
Protein* cont = s.getProtein(0);
SecondaryStructureIterator old = cont->beginSecondaryStructure();
for(SecondaryStructureIterator it = cont->secondaryStructures().begin(); it != cont->secondaryStructures().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Protein* cont = s.getProtein(0);
SecondaryStructureConstIterator old = cont->beginSecondaryStructure();
for(SecondaryStructureConstIterator it = cont->secondaryStructures().begin(); it != cont->secondaryStructures().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
Protein* cont = s.getProtein(0);
ResidueIterator old = cont->beginResidue();
for(ResidueIterator it = cont->residues().begin(); it != cont->residues().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Protein* cont = s.getProtein(0);
ResidueConstIterator old = cont->beginResidue();
for(ResidueConstIterator it = cont->residues().begin(); it != cont->residues().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
Protein* cont = s.getProtein(0);
PDBAtomIterator old = cont->beginPDBAtom();
for(PDBAtomIterator it = cont->pdbAtoms().begin(); it != cont->pdbAtoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Protein* cont = s.getProtein(0);
PDBAtomConstIterator old = cont->beginPDBAtom();
for(PDBAtomConstIterator it = cont->pdbAtoms().begin(); it != cont->pdbAtoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
RESULT
CHECK(Residue)
{
Residue* cont = s.getProtein(0)->getResidue(0);
PDBAtomIterator old = cont->beginPDBAtom();
for(PDBAtomIterator it = cont->pdbAtoms().begin(); it != cont->pdbAtoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const Residue* cont = s.getProtein(0)->getResidue(0);
PDBAtomConstIterator old = cont->beginPDBAtom();
for(PDBAtomConstIterator it = cont->pdbAtoms().begin(); it != cont->pdbAtoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
RESULT
CHECK(SecondaryStructure)
{
SecondaryStructure* cont = s.getProtein(0)->getSecondaryStructure(0);
ResidueIterator old = cont->beginResidue();
for(ResidueIterator it = cont->residues().begin(); it != cont->residues().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const SecondaryStructure* cont = s.getProtein(0)->getSecondaryStructure(0);
ResidueConstIterator old = cont->beginResidue();
for(ResidueConstIterator it = cont->residues().begin(); it != cont->residues().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
SecondaryStructure* cont = s.getProtein(0)->getSecondaryStructure(0);
PDBAtomIterator old = cont->beginPDBAtom();
for(PDBAtomIterator it = cont->pdbAtoms().begin(); it != cont->pdbAtoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const SecondaryStructure* cont = s.getProtein(0)->getSecondaryStructure(0);
PDBAtomConstIterator old = cont->beginPDBAtom();
for(PDBAtomConstIterator it = cont->pdbAtoms().begin(); it != cont->pdbAtoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
RESULT
CHECK(System)
// NucleicAcidIterator
{
System* cont = &s;
NucleicAcidIterator old = cont->beginNucleicAcid();
for(NucleicAcidIterator it = cont->nucleicAcids().begin(); it != cont->nucleicAcids().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
NucleicAcidConstIterator old = cont->beginNucleicAcid();
for(NucleicAcidConstIterator it = cont->nucleicAcids().begin(); it != cont->nucleicAcids().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// NucleotideIterator
{
System* cont = &s;
NucleotideIterator old = cont->beginNucleotide();
for(NucleotideIterator it = cont->nucleotides().begin(); it != cont->nucleotides().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
NucleotideConstIterator old = cont->beginNucleotide();
for(NucleotideConstIterator it = cont->nucleotides().begin(); it != cont->nucleotides().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// ProteinIterator
{
System* cont = &s;
ProteinIterator old = cont->beginProtein();
for(ProteinIterator it = cont->proteins().begin(); it != cont->proteins().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
ProteinConstIterator old = cont->beginProtein();
for(ProteinConstIterator it = cont->proteins().begin(); it != cont->proteins().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// MoleculeIterator
{
System* cont = &s;
MoleculeIterator old = cont->beginMolecule();
for(MoleculeIterator it = cont->molecules().begin(); it != cont->molecules().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
MoleculeConstIterator old = cont->beginMolecule();
for(MoleculeConstIterator it = cont->molecules().begin(); it != cont->molecules().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// AtomIterator
{
System* cont = &s;
AtomIterator old = cont->beginAtom();
for(AtomIterator it = cont->atoms().begin(); it != cont->atoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
AtomConstIterator old = cont->beginAtom();
for(AtomConstIterator it = cont->atoms().begin(); it != cont->atoms().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// AtomContainerIterator
{
System* cont = &s;
AtomContainerIterator old = cont->beginAtomContainer();
for(AtomContainerIterator it = cont->atomContainers().begin(); it != cont->atomContainers().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
AtomContainerConstIterator old = cont->beginAtomContainer();
for(AtomContainerConstIterator it = cont->atomContainers().begin(); it != cont->atomContainers().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// ResidueIterator
{
System* cont = &s;
ResidueIterator old = cont->beginResidue();
for(ResidueIterator it = cont->residues().begin(); it != cont->residues().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
ResidueConstIterator old = cont->beginResidue();
for(ResidueConstIterator it = cont->residues().begin(); it != cont->residues().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// FragmentIterator
{
System* cont = &s;
FragmentIterator old = cont->beginFragment();
for(FragmentIterator it = cont->fragments().begin(); it != cont->fragments().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
FragmentConstIterator old = cont->beginFragment();
for(FragmentConstIterator it = cont->fragments().begin(); it != cont->fragments().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// ChainIterator
{
System* cont = &s;
ChainIterator old = cont->beginChain();
for(ChainIterator it = cont->chains().begin(); it != cont->chains().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
ChainConstIterator old = cont->beginChain();
for(ChainConstIterator it = cont->chains().begin(); it != cont->chains().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
// SecondaryStructureIterator
{
System* cont = &s;
SecondaryStructureIterator old = cont->beginSecondaryStructure();
for(SecondaryStructureIterator it = cont->secondaryStructures().begin(); it != cont->secondaryStructures().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
{
const System* cont = &s;
SecondaryStructureConstIterator old = cont->beginSecondaryStructure();
for(SecondaryStructureConstIterator it = cont->secondaryStructures().begin(); it != cont->secondaryStructures().end(); ++it,++old) {
bool res = it == old;
TEST_EQUAL(res, true);
}
}
RESULT
END_TEST
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