1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
|
# call this with "python -u cartoon_test.py | tee output.txt"
# not to be used in BALLView!
import os
import shutil
# adapt the paths below
DIR = "/local/amoll/all-pdbs/"
TEMPDIR = "/var/tmp/"
BALLVIEW = "/local/amoll/BALL/source/APPLICATIONS/BALLVIEW/BALLView"
TESTDIR = "/local/amoll/cartoon_test_dir/"
result_file = file = open(TESTDIR + "results.txt", 'w')
for f in os.listdir(DIR):
os.popen("zcat " + DIR + f + " > " + TEMPDIR + "test.pdb");
print
print "--------------------------------"
print DIR + f
print
state = os.spawnl(os.P_WAIT, BALLVIEW, "", "cartoon_test2.py")
if state == 0:
result_file.write(f + " OK\n")
shutil.move(TEMPDIR + "test1.png", TESTDIR + f + "_1.png")
#shutil.move(TEMPDIR + "test2.png", TESTDIR + f + "_2.png")
else:
result_file.write(f + " ERROR!\n")
print "ERROR: " + f
result_file.flush()
|
