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// -*- Mode: C++; tab-width: 2; -*-
// vi: set ts=2:
//
// $Id: pair6_12RDFIntegrator.h,v 1.24 2005/12/23 17:01:59 amoll Exp $
//
#ifndef BALL_SOLVATION_PAIR6_12RDFINTEGRATOR_H
#define BALL_SOLVATION_PAIR6_12RDFINTEGRATOR_H
#ifndef BALL_STRUCTURE_RDFINTEGRATOR_H
# include <BALL/STRUCTURE/RDFIntegrator.h>
#endif
#ifndef BALL_MATHS_PIECEWISEFUNCTION_H
# include <BALL/MATHS/piecewiseFunction.h>
#endif
#ifndef BALL_DATATYPE_OPTIONS_H
# include <BALL/DATATYPE/options.h>
#endif
// ?????: DOCU ... documentation for constants
namespace BALL
{
/** 6-12 pair potential integrator.
This class provides a tool for calculating the integral part of the
van-der-Waals interaction energies. The difference to the values
calculated with the standard interaction energy processor is the
inclusion of a radial distribution function
(@see RadialDistributionFunction) into the computaion. \par
\ingroup Solvation
*/
class BALL_EXPORT Pair6_12RDFIntegrator
: public RDFIntegrator
{
public:
BALL_CREATE(Pair6_12RDFIntegrator)
/** Symbolic names for option keys.
This struct contains a symbolic name for each recognized key in
Pair6_12RDFIntegrator::options.
*/
struct BALL_EXPORT Option
{
/** The integration method.
Use integer values with this option.
@see Default::METHOD
@param integration_method integer
*/
static const char* METHOD;
/** This option sets the number of samples to be used in numerical integration.
Use integer values with this option.
@see Default::SAMPLES
@param samples integer
*/
static const char* SAMPLES;
/** The verbosity level.
Use integer values with this option.
@see Default::VERBOSITY
@param verbosity integer
*/
static const char* VERBOSITY;
};
struct BALL_EXPORT Default
{
/** Default verbosity level.
@see Option::VERBOSITY
*/
static const Size VERBOSITY;
/** Default integration method.
@see Option::METHOD
*/
static const Size METHOD;
/** Default number of inetgartion samples.
@see Option::SAMPLES
*/
static const Size SAMPLES;
};
/** The available methods for integration
*/
enum IntegrationMethod
{
METHOD__UNKNOWN = 0,
METHOD__ANALYTICAL = 1,
METHOD__TRAPEZIUM = 2
};
/** @name Constructors and destructors
*/
//@{
/** Default constructor
*/
Pair6_12RDFIntegrator();
/** Copy constructor
@param integrator the integrator we want to copy
*/
Pair6_12RDFIntegrator(const Pair6_12RDFIntegrator& integrator);
/** Detailed constructor
@param A repulsion constant of the 6-12 potential in units of ...
@param B dispersion constant of the 6-12 potential in units of ...
@param k1 geometric correction constant
@param k2 geometric correction constant
@param rdf a radial distribution function
*/
Pair6_12RDFIntegrator(double A, double B, double k1, double k2,
const RadialDistributionFunction& rdf);
/** Destructor
*/
virtual ~Pair6_12RDFIntegrator();
//@}
/** @name Assignment
*/
//@{
/** Assignment operator
@param integrator the integrator to assign from
@return a constant reference to <tt>this</tt>
*/
const Pair6_12RDFIntegrator& operator =
(const Pair6_12RDFIntegrator& integrator);
/** Clear method
*/
virtual void clear();
//@}
/// @name Accessors
//@{
/** Set the constants for the integration, usually done by the calling energy processor.
@param A repulsion constant of the 6-12 potential in units of ...
@param B dispersion constant of the 6-12 potential in units of ...
@param k1 geometric correction constant
@param k2 geometric correction constant
*/
void setConstants(double A, double B, double k1, double k2);
/** Get the constants from this processor.
@param A repulsion constant of the 6-12 potential in units of ...
@param B dispersion constant of the 6-12 potential in units of ...
@param k1 geometric correction constant
@param k2 geometric correction constant
*/
void getConstants(double& A, double& B, double& k1, double& k2);
/** Integrate to Infinity from <tt>from</tt> using previously set constants
@param from the lower limit of integration
@return the value of the integration
*/
double integrateToInf(double from) const;
/** Integrate from <tt>from</tt> to infinity using the specified constants
@param A repulsion constant of the 6-12 potential in units of ...
@param B dispersion constant of the 6-12 potential in units of ...
@param k1 geometric correction constant
@param k2 geometric correction constant
@param from the lower limit of integration
@return the value of the integration
*/
double integrateToInf(double from, double A, double B, double k1,
double k2);
/** Integrate from <tt>from</tt> to <tt>to</tt> using previously assigned
constants
@param from the lower limit
@param to the upper limit
@return the value of the integration
*/
double integrate(double from, double to) const;
/** Integrate from <tt>from</tt> to <tt>to</tt> using the specified constants
@param from the lower limit of integration
@param to the upper limit
@param A repulsion constant of the 6-12 potential in units of ...
@param B dispersion constant of the 6-12 potential in units of ...
@param k1 geometric correction constant
@param k2 geometric correction constant
@return the value of the integration
*/
double integrate(double from, double to, double A, double B, double k1,
double k2);
/** Default operation, integrate from <tt>x</tt> to infinity using
previously assigned constants.
@param x the lower limit of the integration to infinity
@return the value of the integration
*/
virtual double operator () (double x) const;
//@}
/** @name Predicates
*/
//@{
/** Equality operator. Tests whether two instances of
Pair6_12RDFIntegrator have the same content.
@param integrator another instance of Pair6_12RDFIntegrator
@return true, if both instances are equal
*/
bool operator == (const Pair6_12RDFIntegrator& integrator) const;
//@}
/** The options of this Integrator (@see Options)
*/
Options options;
/** @name Debugging and diagnostics
*/
//@{
/** Dumps the whole content of the object
@param s an ostream, defaults to std::cout
@param depth the indentation depth of the output
*/
virtual void dump (std::ostream& s = std::cout, Size depth = 0) const;
//@}
protected:
/*_ Repulsion constant
*/
double A_;
/*_ Dispersion constant
*/
double B_;
/*_ Geometry constant
*/
double k1_;
/*_ Geometry constant
*/
double k2_;
private:
/*_ Integrate an interval analytically. This method does the actual work.
@param interval the interval to be integrated
@param coeffs the coefficients for this interval
@param x0 the value to be subtracted from x
@return the value of the integral
*/
double analyticallyIntegrateInterval(const Interval& interval,
const Coefficients& coeffs, float x0) const;
/*_ Integrate an interval numerically.
@param interval the interval to be integrated
@return the value of the integral
*/
double numericallyIntegrateInterval(const Interval& interval) const;
/*_ Project a number from the integration beam to the projection beam
of an atom center for the rdf thingy.
@param x the value to be projected
@return the projection of <b> x </b>
*/
double project(double x) const;
/*_ Do the reverse of project().
@param x the valut to be reversly projected
@return the projection of <b> x </b>
*/
double unproject(double x) const;
};
} // namespace BALL
#endif // BALL_SOLVATION_PAIR6_12RDFINTEGRATOR_H
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