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<!--This is a configuration file for the integration of a BALLSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
<tool id="splitconncetedcomponents" name="Split2ConnectedComponents" version="0.9.6" force_history_refresh="True">
<description>splits a file into its connected components</description>
<command>/home/AH/nicste/PROMO/GALAXY/new//ballaxy/tools/BALL/build/Split2ConnectedComponents
#if str( $i ) != '' and str( $i ) != 'None' :
-i "$i"
#end if
#if str( $outfile ) != '' and str( $outfile ) != 'None' :
-o "$outfile"
#end if
#if str( $outfile.id ) != '' and str( $outfile.id ) != 'None' :
-o_id "$outfile.id"
#end if
#if str( $__new_file_path__ ) != '' and str( $__new_file_path__ ) != 'None' :
-o_dir "$__new_file_path__"
#end if
#if str( $min_atoms ) != '' and str( $min_atoms ) != 'None' :
-min_atoms "$min_atoms"
#end if
| tail -n 1
</command>
<inputs>
<param name="i" optional="false" label="input mol2-file" type="data" format="mol2"/>
<param name="min_atoms" type="integer" size="4" value="10" label="minimum number of atoms"/>
</inputs>
<outputs>
<data name="outfile" format="mol2"/>
</outputs>
<help>This tool splits a given molecular file into its connected components.
Optional parameters are the minimal number of atoms ('-min_atoms') a connected component should have to be furhter processed, e.g. water can be ommitted.
Output of this tool is a number of mol2 files each containing one connected component.</help>
</tool>
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