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// -*- Mode: C++; tab-width: 2; -*-
// vi: set ts=2:
//
// $Id: PDBInfo.C,v 1.3 2005/02/16 14:09:40 oliver Exp $
//
#include <BALL/FORMAT/PDBInfo.h>
namespace BALL
{
PDBInfo::PDBInfo()
: skipped_records_(),
invalid_records_(),
filename_(""),
id_(""),
name_(""),
number_of_records_(0),
number_of_models_(0),
model_read_(0),
number_of_atom_records_(0),
number_of_hetatm_records_(0)
{
}
PDBInfo::PDBInfo(const PDBInfo& pdbi)
: skipped_records_(pdbi.skipped_records_),
invalid_records_(pdbi.invalid_records_),
filename_(pdbi.filename_),
id_(pdbi.id_),
name_(pdbi.name_),
number_of_records_(pdbi.number_of_records_),
number_of_models_(pdbi.number_of_models_),
model_read_(pdbi.model_read_),
number_of_atom_records_(pdbi.number_of_atom_records_),
number_of_hetatm_records_(pdbi.number_of_hetatm_records_)
{
}
PDBInfo& PDBInfo::operator = (const PDBInfo& pdbi)
{
skipped_records_ = pdbi.skipped_records_;
invalid_records_ = pdbi.invalid_records_;
filename_ = pdbi.filename_;
id_ = pdbi.id_;
name_ = pdbi.name_;
number_of_records_ = pdbi.number_of_records_;
number_of_models_ = pdbi.number_of_models_;
model_read_ = pdbi.model_read_;
number_of_atom_records_ = pdbi.number_of_atom_records_;
number_of_hetatm_records_ = pdbi.number_of_hetatm_records_;
return *this;
}
bool PDBInfo::operator == (const PDBInfo& rhs) const
{
return
(skipped_records_ == rhs.skipped_records_)
&& (invalid_records_ == rhs.invalid_records_)
&& (filename_ == rhs.filename_)
&& (id_ == rhs.id_)
&& (name_ == rhs.name_)
&& (number_of_records_ == rhs.number_of_records_)
&& (number_of_models_ == rhs.number_of_models_)
&& (model_read_ == rhs.model_read_)
&& (number_of_atom_records_ == rhs.number_of_atom_records_)
&& (number_of_hetatm_records_ == rhs.number_of_hetatm_records_);
}
bool PDBInfo::operator != (const PDBInfo& rhs) const
{
return ! operator == (rhs);
}
PDBInfo::~PDBInfo()
{
clear();
}
void PDBInfo::clear()
{
skipped_records_.clear();
invalid_records_.clear();
filename_.clear();
id_.clear();
name_.clear();
number_of_records_ = 0;
number_of_models_ = 0;
model_read_ = 0;
number_of_atom_records_ = 0;
number_of_hetatm_records_ = 0;
}
std::list<Position> PDBInfo::getRecordIndices(PDB::RecordType record) const
{
std::list<Position> indices;
String tag(PDB::RECORD_TYPE_FORMAT[record].string);
Position i = 0;
for (PDBRecords::ConstIterator it(skipped_records_.begin()); it != skipped_records_.end(); ++it, ++i)
{
if (it->hasPrefix(tag))
{
indices.push_back(i);
}
}
return indices;
}
void PDBInfo::persistentWrite(PersistenceManager& pm, const char* name) const
{
pm.writeObjectHeader(this,name);
skipped_records_.persistentWrite(pm,"skipped_records_");
invalid_records_.persistentWrite(pm, "invalid_records_");
BALL_WRITE_PRIMITIVE_MEMBER(pm,filename_);
BALL_WRITE_PRIMITIVE_MEMBER(pm,id_);
BALL_WRITE_PRIMITIVE_MEMBER(pm,name_);
BALL_WRITE_PRIMITIVE_MEMBER(pm,number_of_records_);
BALL_WRITE_PRIMITIVE_MEMBER(pm,number_of_models_);
BALL_WRITE_PRIMITIVE_MEMBER(pm,model_read_);
BALL_WRITE_PRIMITIVE_MEMBER(pm,number_of_atom_records_);
BALL_WRITE_PRIMITIVE_MEMBER(pm,number_of_hetatm_records_);
pm.writeObjectTrailer(name);
}
void PDBInfo::persistentRead(PersistenceManager& pm)
{
pm.checkObjectHeader(skipped_records_,"skipped_records_");
skipped_records_.persistentRead(pm);
pm.checkObjectTrailer("skipped_records_");
pm.checkObjectHeader(invalid_records_,"invalid_records_");
invalid_records_.persistentRead(pm);
pm.checkObjectTrailer("invalid_records_");
BALL_READ_PRIMITIVE_MEMBER(pm,filename_);
BALL_READ_PRIMITIVE_MEMBER(pm,id_);
BALL_READ_PRIMITIVE_MEMBER(pm,name_);
BALL_READ_PRIMITIVE_MEMBER(pm,number_of_records_);
BALL_READ_PRIMITIVE_MEMBER(pm,number_of_models_);
BALL_READ_PRIMITIVE_MEMBER(pm,model_read_);
BALL_READ_PRIMITIVE_MEMBER(pm,number_of_atom_records_);
BALL_READ_PRIMITIVE_MEMBER(pm,number_of_hetatm_records_);
}
} // namespace BALL
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