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class DNAMutator
{
%TypeHeaderCode
#include <BALL/STRUCTURE/DNAMutator.h>
%End
public:
enum MatchingMode { MINIMUM_ANGLE, MATCH_TORSION };
DNAMutator(EnergyMinimizer* mini = NULL, ForceField* ff = NULL, FragmentDB* frag = NULL);
~DNAMutator();
virtual void setup();
void setMinimizer(EnergyMinimizer* mini);
void setForceField(ForceField* ff);
void setMaxOptimizationSteps(Size steps);
void setUsedProperty(unsigned int p);
bool optimize();
void setStrands(Chain* s1, Chain* s2);
void setFirstStrand(Chain* s1);
void setSecondStrand(Chain* s2);
void setNucleotideMapping(NucleotideMapping& bij);
void addMutation(Index i, const String& new_frag_name);
void clearMutations();
void setMatchingMode(MatchingMode mmode);
};
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