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class AddHydrogenProcessor
: CompositeProcessor
{
%TypeHeaderCode
#include <BALL/PYTHON/EXTENSIONS/pyUnaryProcessors.h>
#include <BALL/STRUCTURE/addHydrogenProcessor.h>
%End
public:
AddHydrogenProcessor();
virtual ~AddHydrogenProcessor();
virtual bool start();
virtual Processor::Result operator() (Composite &composite);
Size getConnectivity(const Atom& atom) const;
Size getNumberOfAddedHydrogens() const;
protected:
Processor::Result placePeptideBondH_(Residue* res);
Size countBondOrders(const Atom& atom) const;
void addHydrogen_(Atom& atom, Vector3 position);
bool isRingAtom_(const Atom& atom) const;
vector<Atom*> getPartners_(Atom& atom) const;
Vector3 getNormal_(const Vector3& v) const;
bool normalize_(Vector3& v) const;
bool hasMultipleBond_(const Atom& atom) const;
float getBondLength_(Position element) const;
};
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